public void ValidateFVQSPReplaceRange()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGC");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
provObj.ReplaceRange(provObj.Count - 2, "GC");
Assert.AreEqual(seqObj[2].Name, provObj.GetISequenceItem(provObj.Count - 2).Name);
Assert.AreEqual(seqObj[3].Name, provObj.GetISequenceItem(provObj.Count - 1).Name);
ApplicationLog.WriteLine(@"FVQSP Bvt : Successfully validated the ReplaceRange() method");
Console.WriteLine(@"FVQSP Bvt : Successfully validated the ReplaceRange() method");
}
public void ValidateFVQSPReplaceSeqItem()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
provObj.Add(seqObj[2]);
provObj.Add(seqObj[3]);
provObj.Replace(0, seqObj[3]);
Assert.AreEqual(seqObj[3], provObj.GetISequenceItem(0));
ApplicationLog.WriteLine(
"FVQSP Bvt : Successfully validated the Replace(int, seqItem) method");
Console.WriteLine(
"FVQSP Bvt : Successfully validated the Replace(int, seqItem) method");
}
