protected override void DoTest()
{
RunUI(() => SkylineWindow.OpenFile(TestFilesDir.GetTestPath("ExpressionAnnotationsTest.sky")));
var documentSettingsDlg = ShowDialog <DocumentSettingsDlg>(SkylineWindow.ShowDocumentSettingsDialog);
var defineAnnotationDlg = ShowDialog <DefineAnnotationDlg>(documentSettingsDlg.AddAnnotation);
RunUI(() =>
{
defineAnnotationDlg.AnnotationName = "PeptideCount";
defineAnnotationDlg.IsCalculated = true;
defineAnnotationDlg.AnnotationTargets =
AnnotationDef.AnnotationTargetSet.Singleton(AnnotationDef.AnnotationTarget.protein);
defineAnnotationDlg.SelectPropertyPath(PropertyPath.Root
.Property(nameof(Protein.Peptides)).LookupAllItems());
defineAnnotationDlg.AggregateOperation = AggregateOperation.Count;
});
OkDialog(defineAnnotationDlg, defineAnnotationDlg.OkDialog);
OkDialog(documentSettingsDlg, documentSettingsDlg.OkDialog);
RunUI(() => SkylineWindow.ShowDocumentGrid(true));
var documentGrid = FindOpenForm <DocumentGridForm>();
RunUI(() => documentGrid.DataboundGridControl.ChooseView(
ViewGroup.BUILT_IN.Id.ViewName(Resources.SkylineViewContext_GetDocumentGridRowSources_Proteins)));
WaitForConditionUI(() => documentGrid.IsComplete);
var colProtein = documentGrid.FindColumn(PropertyPath.Root);
Assert.IsNotNull(colProtein);
var colPeptideCount =
documentGrid.FindColumn(PropertyPath.Root.Property(AnnotationDef.ANNOTATION_PREFIX + "PeptideCount"));
Assert.AreEqual(typeof(double), colPeptideCount.ValueType);
Assert.IsNotNull(colPeptideCount);
RunUI(() =>
{
for (int iRow = 0; iRow < documentGrid.RowCount; iRow++)
{
var row = documentGrid.DataGridView.Rows[iRow];
var protein = (Protein)row.Cells[colProtein.Index].Value;
var peptideCountObject = row.Cells[colPeptideCount.Index].Value;
Assert.IsInstanceOfType(peptideCountObject, typeof(double));
var peptideCount = (int)(double)peptideCountObject;
Assert.AreEqual(protein.Peptides.Count, peptideCount);
}
});
var saveAsFileName = TestFilesDir.GetTestPath("result.sky");
RunUI(() => SkylineWindow.SaveDocument(saveAsFileName));
var documentReader = new DocumentReader()
{
RemoveCalculatedAnnotationValues = false
};
using (var stream = File.Open(saveAsFileName, FileMode.Open))
using (var reader = new XmlTextReader(stream)
{
WhitespaceHandling = WhitespaceHandling.Significant
})
{
while (reader.NodeType != XmlNodeType.Element)
{
reader.Read();
}
documentReader.ReadXml(reader);
foreach (var protein in documentReader.Children)
{
var peptideCount = Convert.ToInt32(protein.Annotations.GetAnnotation("PeptideCount"));
Assert.AreEqual(protein.Children.Count, peptideCount);
}
}
}