/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// WhichBin to match pMCROfRho which matches ROfRho
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
if (ir != -1)
{
double weightFactor = _absorbAction(
photon.History.SubRegionInfoList.Select(c => c.NumberOfCollisions).ToList(),
photon.History.SubRegionInfoList.Select(p => p.PathLength).ToList(),
_perturbedOps);
Mean[ir] += photon.DP.Weight * weightFactor;
if (TallySecondMoment)
{
SecondMoment[ir] += photon.DP.Weight * weightFactor * photon.DP.Weight * weightFactor;
}
TallyCount++;
}
}
/// <summary>
/// method to tally reflected photon by determining cumulative MT in each tissue subregion and binning in MT
/// </summary>
/// <param name="photon">Photon (includes HistoryData)</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// calculate the radial and time bin of reflected photon
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
for (int i = 0; i < NumSubregions; i++)
{
var timeInSubRegion = DetectorBinning.GetTimeDelay(photon.History.SubRegionInfoList[i].PathLength,
_tissue.Regions[i].RegionOP.N);
// make sure floating point round in Photon's update to S and subsequently to PathLength in SRIL doesn't get tallied
if (timeInSubRegion > 1e-14)
{
var it = DetectorBinning.WhichBin(timeInSubRegion, Time.Count - 1, Time.Delta, Time.Start);
// tally Continuous Absorption Weighting (CAW)
var tally = Math.Exp(-_tissue.Regions[i].RegionOP.Mua * photon.History.SubRegionInfoList[i].PathLength);
Mean[ir, i, it] += tally;
if (TallySecondMoment)
{
SecondMoment[ir, i, it] += tally * tally;
}
}
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// ray trace exit location and direction to location at ZPlane
var positionAtZPlane = LayerTissueRegionToolbox.RayExtendToInfinitePlane(
photon.DP.Position, photon.DP.Direction, ZPlane);
// WhichBin to match ROfRhoAndTimeDetector
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(positionAtZPlane.X, positionAtZPlane.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var it = DetectorBinning.WhichBin(photon.DP.TotalTime, Time.Count - 1, Time.Delta, Time.Start);
if ((ir != -1) && (it != -1))
{
double weightFactor = _absorbAction(
photon.History.SubRegionInfoList.Select(c => c.NumberOfCollisions).ToList(),
photon.History.SubRegionInfoList.Select(p => p.PathLength).ToList(),
_perturbedOps, _referenceOps, _perturbedRegionsIndices);
Mean[ir, it] += photon.DP.Weight * weightFactor;
if (TallySecondMoment)
{
SecondMoment[ir, it] += photon.DP.Weight * weightFactor * photon.DP.Weight * weightFactor;
}
TallyCount++;
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// WhichBin to match ROfRhoAndTimeDetector
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var it = DetectorBinning.WhichBin(photon.DP.TotalTime, Time.Count - 1, Time.Delta, Time.Start);
if ((ir != -1) && (it != -1))
{
double weightFactor = _absorbAction(
photon.History.SubRegionInfoList.Select(c => c.NumberOfCollisions).ToList(),
photon.History.SubRegionInfoList.Select(p => p.PathLength).ToList(),
_perturbedOps, _referenceOps, _perturbedRegionsIndices);
Mean[ir, it] += photon.DP.Weight * weightFactor;
if (TallySecondMoment)
{
SecondMoment[ir, it] += photon.DP.Weight * weightFactor * photon.DP.Weight * weightFactor;
}
TallyCount++;
}
}
public void verify_that_GetFinalPositionAndWeight_samples_from_UnifOfRhoAndZ_sampling_correctly()
{
ITissueInput tissueInput = new SingleInfiniteCylinderTissueInput();
ITissue tissue = tissueInput.CreateTissue(AbsorptionWeightingType.Discrete,
PhaseFunctionType.HenyeyGreenstein, 0);
tissue.Regions[1] = _xyzLoaderUnif.FluorescentTissueRegion;
for (int i = 0; i < 100; i++)
{
var photon = _fluorEmissionAOfRhoAndZSourceUnif.GetNextPhoton(tissue);
// verify that photons start within range of midpoints of voxels in infinite cylinder
Assert.IsTrue(photon.DP.Position.X <= 3.5);
Assert.AreEqual(photon.DP.Position.Y, 0);
Assert.IsTrue((photon.DP.Position.Z >= 0.5) && (photon.DP.Position.Z <= 1.5));
// verify sampling is proceeding in coded sequence
// detector center=(0,0,1) radius=4, rho=[0 4] 4 bins, z=[0 2] 2 bins
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(
photon.DP.Position.X, photon.DP.Position.Y),
_rhozLoaderUnif.Rho.Count - 1, _rhozLoaderUnif.Rho.Delta, _rhozLoaderUnif.Rho.Start);
var iz = DetectorBinning.WhichBin(photon.DP.Position.Z, _rhozLoaderUnif.Z.Count - 1, _rhozLoaderUnif.Z.Delta, _rhozLoaderUnif.Z.Start);
var rhozNorm = (_rhozLoaderUnif.Rho.Start + (ir + 0.5) * _rhozLoaderUnif.Rho.Delta) * 2.0 * Math.PI * _rhozLoaderUnif.Rho.Delta * _rhozLoaderUnif.Z.Delta;
// verify weight at location is equal to AOfRhoAndZ note: setup with single y bin
// expected: Map [ 1 1 1 1; 1 1 1 1] row major
// expected: A [ 1 3 5 7; 2 4 6 8] row major
Assert.IsTrue(Math.Abs(photon.DP.Weight -
_rhozLoaderUnif.AOfRhoAndZ[ir, iz] * rhozNorm) < 1e-6);
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var totalTime = photon.DP.TotalTime;
for (int iw = 0; iw < Omega.Count; iw++)
{
double freq = Omega.AsEnumerable().ToArray()[iw];
Mean[ir, iw] += photon.DP.Weight * (Math.Cos(-2 * Math.PI * freq * totalTime) +
Complex.ImaginaryOne * Math.Sin(-2 * Math.PI * freq * totalTime));
if (TallySecondMoment) // 2nd moment is E[xx*]=E[xreal^2]+E[ximag^2]
{
SecondMoment[ir, iw] +=
photon.DP.Weight * (Math.Cos(-2 * Math.PI * freq * totalTime)) *
photon.DP.Weight * (Math.Cos(-2 * Math.PI * freq * totalTime)) +
photon.DP.Weight * (Math.Sin(-2 * Math.PI * freq * totalTime)) *
photon.DP.Weight * (Math.Sin(-2 * Math.PI * freq * totalTime));
}
}
TallyCount++;
}
/// <summary>
/// method to tally given two consecutive photon data points
/// </summary>
/// <param name="previousDP">previous data point</param>
/// <param name="dp">current data point</param>
/// <param name="currentRegionIndex">index of region photon current is in</param>
public void TallySingle(PhotonDataPoint previousDP, PhotonDataPoint dp, int currentRegionIndex)
{
var totalTime = dp.TotalTime;
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(dp.Position.X, dp.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var iz = DetectorBinning.WhichBin(dp.Position.Z, Z.Count - 1, Z.Delta, Z.Start);
var weight = _absorptionWeightingMethod(previousDP, dp, currentRegionIndex);
// Note: GetVolumeAbsorptionWeightingMethod in Initialize method determines the *absorbed* weight
// so for fluence this weight is divided by Mua
var regionIndex = currentRegionIndex;
if (weight != 0.0)
{
for (int iw = 0; iw < Omega.Count; iw++)
{
double freq = Omega.AsEnumerable().ToArray()[iw];
Mean[ir, iz, iw] += (weight / _ops[regionIndex].Mua) *
(Math.Cos(-2 * Math.PI * freq * totalTime) +
Complex.ImaginaryOne * Math.Sin(-2 * Math.PI * freq * totalTime));
if (TallySecondMoment)
{
_tallyForOnePhoton[ir, iz, iw] += (weight / _ops[regionIndex].Mua) *
(Math.Cos(-2 * Math.PI * freq * totalTime) +
Complex.ImaginaryOne * Math.Sin(-2 * Math.PI * freq * totalTime));
}
}
TallyCount++;
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
Mean[ir] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[ir] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
// if exiting tissue top surface, Uz < 0 => Acos in [pi/2, pi]
var ia = DetectorBinning.WhichBin(Math.Acos(photon.DP.Direction.Uz), Angle.Count - 1, Angle.Delta, Angle.Start);
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
Mean[ir, ia] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[ir, ia] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
Mean[ir] += photon.DP.Weight / photon.DP.Direction.Uz;
if (TallySecondMoment)
{
SecondMoment[ir] += (photon.DP.Weight / photon.DP.Direction.Uz) * (photon.DP.Weight / photon.DP.Direction.Uz);
}
TallyCount++;
}
/// <summary>
/// method to tally given two consecutive photon data points
/// </summary>
/// <param name="previousDP">previous data point</param>
/// <param name="dp">current data point</param>
/// <param name="currentRegionIndex">index of region photon current is in</param>
public void TallySingle(PhotonDataPoint previousDP, PhotonDataPoint dp, int currentRegionIndex)
{
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(dp.Position.X, dp.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var iz = DetectorBinning.WhichBin(dp.Position.Z, Z.Count - 1, Z.Delta, Z.Start);
var weight = _absorptionWeightingMethod(previousDP, dp, currentRegionIndex);
if (weight != 0.0)
{
Mean[ir, iz] += weight;
if (TallySecondMoment)
{
_tallyForOnePhoton[ir, iz] += weight;
}
TallyCount++;
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var it = DetectorBinning.WhichBin(photon.DP.TotalTime, Time.Count - 1, Time.Delta, Time.Start);
Mean[ir, it] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[ir, it] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
double maxDepth = photon.History.HistoryData.Max(d => d.Position.Z);
var id = DetectorBinning.WhichBin(maxDepth, MaxDepth.Count - 1, MaxDepth.Delta, MaxDepth.Start);
Mean[ir, id] += photon.DP.Weight; // mean integrated over max depth = R(rho)
if (TallySecondMoment)
{
SecondMoment[ir, id] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
if (ir != -1)
{
double weightFactor = _absorbAction(
photon.History.SubRegionInfoList.Select(c => c.NumberOfCollisions).ToList(),
photon.History.SubRegionInfoList.Select(p => p.PathLength).ToList(),
_perturbedOps, _referenceOps, _perturbedRegionsIndices);
Mean[ir] += photon.DP.Weight * weightFactor;
if (TallySecondMoment)
{
SecondMoment[ir] += photon.DP.Weight * weightFactor * photon.DP.Weight * weightFactor;
}
TallyCount++;
}
}
/// <summary>
/// method to tally given two consecutive photon data points
/// </summary>
/// <param name="previousDP">previous data point</param>
/// <param name="dp">current data point</param>
/// <param name="currentRegionIndex">index of region photon current is in</param>
public void TallySingle(PhotonDataPoint previousDP, PhotonDataPoint dp, int currentRegionIndex)
{
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(dp.Position.X, dp.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var iz = DetectorBinning.WhichBin(dp.Position.Z, Z.Count - 1, Z.Delta, Z.Start);
var weight = _absorptionWeightingMethod(previousDP, dp, currentRegionIndex);
// Note: GetVolumeAbsorptionWeightingMethod in Initialize method determines the *absorbed* weight
// so for fluence this weight is divided by Mua
var regionIndex = currentRegionIndex;
if (weight != 0.0)
{
Mean[ir, iz] += weight / _ops[regionIndex].Mua;
if (TallySecondMoment)
{
_tallyForOnePhoton[ir, iz] += weight / _ops[regionIndex].Mua;
}
TallyCount++;
}
}
/// <summary>
/// method to tally given two consecutive photon data points
/// </summary>
/// <param name="previousDP">previous data point</param>
/// <param name="dp">current data point</param>
/// <param name="currentRegionIndex">index of region photon current is in</param>
public void TallySingle(PhotonDataPoint previousDP, PhotonDataPoint dp, int currentRegionIndex)
{
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(dp.Position.X, dp.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var iz = DetectorBinning.WhichBin(dp.Position.Z, Z.Count - 1, Z.Delta, Z.Start);
// using Acos, -1<Uz<1 goes to pi<theta<0, so first bin is most forward directed angle
var ia = DetectorBinning.WhichBin(Math.Acos(dp.Direction.Uz), Angle.Count - 1, Angle.Delta, Angle.Start);
var weight = _absorptionWeightingMethod(previousDP, dp, currentRegionIndex);
var regionIndex = currentRegionIndex;
if (weight != 0.0)
{
Mean[ir, iz, ia] += weight / _ops[regionIndex].Mua;
if (TallySecondMoment)
{
_tallyForOnePhoton[ir, iz, ia] += weight / _ops[regionIndex].Mua;
}
TallyCount++;
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// ray trace exit location and direction to location at ZPlane in air
var positionAtHeight = LayerTissueRegionToolbox.RayExtendToInfinitePlane(
photon.DP.Position, photon.DP.Direction, ZPlane);
var ir = DetectorBinning.WhichBin(DetectorBinning.GetRho(positionAtHeight.X, positionAtHeight.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
double maxDepth = photon.History.HistoryData.Max(d => d.Position.Z);
var id = DetectorBinning.WhichBin(maxDepth, MaxDepth.Count - 1, MaxDepth.Delta, MaxDepth.Start);
Mean[ir, id] += photon.DP.Weight; // mean integrated over max depth = R(rho)
if (TallySecondMoment)
{
SecondMoment[ir, id] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
if (!IsWithinDetectorAperture(photon))
{
return;
}
// ray trace exit location and direction to location at ZPlane
var positionAtZPlane = LayerTissueRegionToolbox.RayExtendToInfinitePlane(
photon.DP.Position, photon.DP.Direction, ZPlane);
var ir = DetectorBinning.WhichBin(
DetectorBinning.GetRho(positionAtZPlane.X, positionAtZPlane.Y),
Rho.Count - 1,
Rho.Delta,
Rho.Start);
Mean[ir] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[ir] += photon.DP.Weight * photon.DP.Weight;
}
TallyCount++;
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
// calculate the radial bin to attribute the deposition
var irho = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var subregionMT = new double[NumSubregions];
bool talliedMT = false;
// go through photon history and claculate momentum transfer
// assumes that no MT tallied at pseudo-collisions (reflections and refractions)
// this algorithm needs to look ahead to angle of next DP, but needs info from previous to determine whether real or pseudo-collision
PhotonDataPoint previousDP = photon.History.HistoryData.First();
PhotonDataPoint currentDP = photon.History.HistoryData.Skip(1).Take(1).First();
foreach (PhotonDataPoint nextDP in photon.History.HistoryData.Skip(2))
{
if (previousDP.Weight != currentDP.Weight) // only for true collision points
{
var csr = _tissue.GetRegionIndex(currentDP.Position); // get current region index
// get angle between current and next
double cosineBetweenTrajectories = Direction.GetDotProduct(currentDP.Direction, nextDP.Direction);
var momentumTransfer = 1 - cosineBetweenTrajectories;
subregionMT[csr] += momentumTransfer;
talliedMT = true;
}
previousDP = currentDP;
currentDP = nextDP;
}
// tally total MT
double totalMT = subregionMT.Sum();
if (totalMT > 0.0) // only tally if momentum transfer accumulated
{
var imt = DetectorBinning.WhichBin(totalMT, MTBins.Count - 1, MTBins.Delta, MTBins.Start);
Mean[irho, imt] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[irho, imt] += photon.DP.Weight * photon.DP.Weight;
}
if (talliedMT)
{
TallyCount++;
}
// tally fractional MT in each subregion
int ifrac;
for (int isr = 0; isr < NumSubregions; isr++)
{
// add 1 to ifrac to offset bin 0 added for =0 only tallies
ifrac = DetectorBinning.WhichBin(subregionMT[isr] / totalMT,
FractionalMTBins.Count - 1, FractionalMTBins.Delta, FractionalMTBins.Start) + 1;
// put identically 0 fractional MT into separate bin at index 0
if (subregionMT[isr] / totalMT == 0.0)
{
ifrac = 0;
}
// put identically 1 fractional MT into separate bin at index Count+1 -1
if (subregionMT[isr] / totalMT == 1.0)
{
ifrac = FractionalMTBins.Count;
}
FractionalMT[irho, imt, isr, ifrac] += photon.DP.Weight;
}
}
}
/// <summary>
/// method to tally to detector
/// </summary>
/// <param name="photon">photon data needed to tally</param>
public void Tally(Photon photon)
{
// calculate the radial bin to attribute the deposition
var irho = DetectorBinning.WhichBin(DetectorBinning.GetRho(photon.DP.Position.X, photon.DP.Position.Y), Rho.Count - 1, Rho.Delta, Rho.Start);
var tissueMT = new double[2]; // 2 is for [static, dynamic] tally separation
bool talliedMT = false;
double totalMT = 0;
var totalMTOfZForOnePhoton = new double[Rho.Count - 1, Z.Count - 1];
var dynamicMTOfZForOnePhoton = new double[Rho.Count - 1, Z.Count - 1];
// go through photon history and claculate momentum transfer
// assumes that no MT tallied at pseudo-collisions (reflections and refractions)
// this algorithm needs to look ahead to angle of next DP, but needs info from previous to determine whether real or pseudo-collision
PhotonDataPoint previousDP = photon.History.HistoryData.First();
PhotonDataPoint currentDP = photon.History.HistoryData.Skip(1).Take(1).First();
foreach (PhotonDataPoint nextDP in photon.History.HistoryData.Skip(2))
{
if (previousDP.Weight != currentDP.Weight) // only for true collision points
{
var csr = _tissue.GetRegionIndex(currentDP.Position); // get current region index
// get z bin of current position
var iz = DetectorBinning.WhichBin(currentDP.Position.Z, Z.Count - 1, Z.Delta, Z.Start);
// get angle between current and next
double cosineBetweenTrajectories = Direction.GetDotProduct(currentDP.Direction, nextDP.Direction);
var momentumTransfer = 1 - cosineBetweenTrajectories;
totalMT += momentumTransfer;
TotalMTOfZ[irho, iz] += photon.DP.Weight * momentumTransfer;
totalMTOfZForOnePhoton[irho, iz] += photon.DP.Weight * momentumTransfer;
if (_rng.NextDouble() < _bloodVolumeFraction[csr]) // hit blood
{
tissueMT[1] += momentumTransfer;
DynamicMTOfZ[irho, iz] += photon.DP.Weight * momentumTransfer;
dynamicMTOfZForOnePhoton[irho, iz] += photon.DP.Weight * momentumTransfer;
SubregionCollisions[csr, 1] += 1; // add to dynamic collision count
}
else // index 0 captures static events
{
tissueMT[0] += momentumTransfer;
SubregionCollisions[csr, 0] += 1; // add to static collision count
}
talliedMT = true;
}
previousDP = currentDP;
currentDP = nextDP;
}
if (totalMT > 0.0) // only tally if momentum transfer accumulated
{
var imt = DetectorBinning.WhichBin(totalMT, MTBins.Count - 1, MTBins.Delta, MTBins.Start);
Mean[irho, imt] += photon.DP.Weight;
if (TallySecondMoment)
{
SecondMoment[irho, imt] += photon.DP.Weight * photon.DP.Weight;
for (int i = 0; i < Rho.Count - 1; i++)
{
for (int j = 0; j < Z.Count - 1; j++)
{
TotalMTOfZSecondMoment[i, j] += totalMTOfZForOnePhoton[i, j] * totalMTOfZForOnePhoton[i, j];
DynamicMTOfZSecondMoment[i, j] += dynamicMTOfZForOnePhoton[i, j] * dynamicMTOfZForOnePhoton[i, j];
}
}
}
if (talliedMT)
{
TallyCount++;
}
// tally DYNAMIC fractional MT in each subregion
int ifrac;
for (int isr = 0; isr < NumSubregions; isr++)
{
// add 1 to ifrac to offset bin 0 added for =0 only tallies
ifrac = DetectorBinning.WhichBin(tissueMT[1] / totalMT,
FractionalMTBins.Count - 1, FractionalMTBins.Delta, FractionalMTBins.Start) + 1;
// put identically 0 fractional MT into separate bin at index 0
if (tissueMT[1] / totalMT == 0.0)
{
ifrac = 0;
}
// put identically 1 fractional MT into separate bin at index Count+1 -1
if (tissueMT[1] / totalMT == 1.0)
{
ifrac = FractionalMTBins.Count;
}
FractionalMT[irho, imt, ifrac] += photon.DP.Weight;
}
}
}
