public IActionResult Delete(Guid id, [FromBody] Deletion deletion)
{
logger.LogInformation($"Looking for timesheet {id}");
Timecard timecard = repository.Find(id);
if (timecard == null)
{
return(NotFound());
}
if (timecard.CanBeDeleted() == false)
{
return(StatusCode(409, new InvalidStateError()
{
}));
}
var transition = new Transition(deletion, TimecardStatus.Deleted);
logger.LogInformation($"Deleting timesheet {transition}");
timecard.Transitions.Add(transition);
repository.Delete(id);
return(Ok(transition));
}
public void LoadContent(Console console)
{
Console = console;
Console.FontChanged += (s, e) =>
{
CalculateInputPrefixWidth();
_inputBuffer.Font = console.Font;
SetDirty();
};
_inputBuffer.Font = console.Font;
Console.WindowAreaChanged += (s, e) => SetDirty();
Caret.Moved += (s, e) => SetDirty();
CalculateInputPrefixWidth();
Caret.LoadContent(this);
RepeatingInput.LoadContent(this);
InputHistory.LoadContent(this);
Autocompletion.LoadContent(this);
CopyPasting.LoadContent(this);
Movement.LoadContent(this);
Tabbing.LoadContent(this);
Deletion.LoadContent(this);
CommandExecution.LoadContent(this);
CaseSenitivity.LoadContent(this);
Selection.LoadContent(this);
_loaded = true;
}
public IActionResult DeleteTimecard(string id, Deletion deletion)
{
Timecard timecard = Database.Find(id);
if (timecard == null)
{
return(NotFound());
}
if (timecard.CanBeDeleted() == false)
{
return(StatusCode(409, new InvalidStateError()
{
}));
}
// This verifies that timecard deleter is timecard resource
if (deletion.Resource != timecard.Resource)
{
return(StatusCode(409, new ResourceDoesNotManageError()));
}
Database.Delete(timecard);
return(Ok());
}
public void DeletionMutationTest()
{
IChromosome<int> a = new DigitalChromosome().GenerateFromArray(new int[] { 12, 13, 14, 15, 16, 17, 18, 19, 20 });
Deletion<int> mutation = new Deletion<int>(3, 5);
IChromosome<int> res = mutation.Mutate(a);
IChromosome<int> exp = new DigitalChromosome().GenerateFromArray(new int[] { 12, 13, 14, 18, 19, 20 });
Assert.AreEqual(exp, res);
}
static void Main(string[] args)
{
List <String> CommandIntroduction = new List <string> {
"0.Quit",
"1.Add a to do",
"2.Display current to-do list",
"3.delte a to do list"
};
foreach (string i in CommandIntroduction)
{
Console.WriteLine(i);
}
int command;
do
{
command = Convert.ToInt32((Console.ReadLine()));
switch (command)
{
case 0:
Console.WriteLine("Goodbye");
break;
case 1:
Console.WriteLine("Give the title");
string title = Console.ReadLine();
Console.WriteLine("Give the description");
string description = Console.ReadLine();
Console.WriteLine("Give the due date in dd/mm/yyyy");
DateTime due_date = DateTime.ParseExact(Console.ReadLine(), "dd/mm/yyyy", CultureInfo.InvariantCulture);
Todo new_event = new Todo(title, description, due_date);
Console.WriteLine("\n");
break;
case 2:
Display.DisplayTodo();
Console.WriteLine("\n");
break;
case 3:
Console.WriteLine("Give the string of title or a number as an id");
string input = Console.ReadLine();
int id;
if (int.TryParse(input, out id))
{
Deletion.deleteTodo(id);
}
else
{
Deletion.deleteTodo(input);
}
Console.WriteLine("\n");
break;
}
}while(command != 0);
}
public override void GenerateCode(GeneratedMethod method, ISourceWriter writer)
{
writer.Write($"case {SpecificEvent.VariableType.FullNameInCode()} {SpecificEvent.Usage}:");
writer.IndentionLevel++;
if (AlwaysDeletes)
{
writer.Write("return null;");
}
CreationFrame?.GenerateCode(method, writer);
if (Apply != null)
{
if (CreationFrame == null)
{
var defaultConstructor = AggregateType.GetConstructor(
BindingFlags.Instance | BindingFlags.Public | BindingFlags.NonPublic, null, Type.EmptyTypes,
null);
if (defaultConstructor?.IsPublic == true)
{
writer.Write($"{Aggregate.Usage} ??= new {AggregateType.FullNameInCode()}();");
}
else if (defaultConstructor?.IsPublic == false)
{
writer.Write($"{Aggregate.Usage} ??= AggregateBuilder();");
}
else
{
var errorMessage =
$"Projection for {AggregateType.FullName} should either have the Create Method or Constructor for event of type {SpecificEvent.VariableType.FullNameInCode()}, or {AggregateType.FullName} should have a Default Constructor.";
writer.Write(
$"if({Aggregate.Usage} == default) throw new ArgumentException(\"{errorMessage}\");");
}
}
Apply.GenerateCode(method, writer);
}
if (Deletion != null)
{
writer.Write($"if ({Aggregate.Usage} == null) return null;");
Deletion.GenerateCode(method, writer);
}
writer.Write($"return {Aggregate.Usage};");
writer.IndentionLevel--;
Next?.GenerateCode(method, writer);
}
public void DeleteWhere <T>(Expression <Func <T, bool> > expression)
{
assertNotDisposed();
var deletion = new Deletion(StorageFor <T>());
deletion.ApplyFiltering(this, expression);
_unitOfWork.Add(deletion);
}
public void ProcessAction(ConsoleAction action)
{
InputHistory.OnAction(action);
Autocompletion.OnAction(action);
CopyPasting.OnAction(action);
Movement.OnAction(action);
Tabbing.OnAction(action);
Deletion.OnAction(action);
CommandExecution.OnAction(action);
CaseSenitivity.OnAction(action);
}
public void DeleteWhere <T>(Expression <Func <T, bool> > expression)
{
assertNotDisposed();
var documentStorage = StorageFor <T>();
var deletion = new Deletion(documentStorage, documentStorage.DeleteFragment);
deletion.ApplyFiltering(this, expression);
_workTracker.Add(deletion);
}
public static Mutation CreateDeletedColumnMutation(IEnumerable <FluentMutation> mutation)
{
var columnNames = mutation.Select(m => m.Column.ColumnName).ToList();
var deletion = new Deletion {
Timestamp = DateTimeOffset.Now.ToTimestamp(),
Predicate = CreateSlicePredicate(columnNames)
};
return(new Mutation {
Deletion = deletion
});
}
public override void deletebtn_Click(object sender, EventArgs e)
{
if (edit == 1)
{
DialogResult dr = MessageBox.Show("Are you sure , you want to delete record?", "Question...", MessageBoxButtons.YesNo, MessageBoxIcon.Question);
if (dr == DialogResult.Yes)
{
Deletion d = new Deletion();
d.delete(StockID, "st_stockdeletes", "@stockid");
R.ShowStock(DataGridView1, StockIDGV, SprodIDGV, ProductNamepwGV, PQuantityGV, PurchaseRateGV, PSalesRateGV);
}
}
}
public override void BtnDelete_Click(object sender, EventArgs e)
{
if (edit == 1)
{
DialogResult dr = MessageBox.Show("Are you sure, You want to Delete record?", "Question...", MessageBoxButtons.YesNo, MessageBoxIcon.Question);
if (dr == DialogResult.Yes)
{
Deletion d = new Deletion();
d.delete(supplierID, "st_deleteSupplier", "@suppID");
r.showSuppliers(dataGridView1, suppIDGV, companyGV, personGV, Phone1GV, phone2GV, addressGV, ntnGV, statusGV);
}
}
}
public static IEnumerable <Mutation> CreateDeletedColumnMutation(IEnumerable <FluentMutation> mutation)
{
foreach (var col in mutation)
{
var deletion = new Deletion {
Timestamp = col.ColumnTimestamp.ToCassandraTimestamp(),
Predicate = CreateSlicePredicate(new[] { col.Column.ColumnName })
};
yield return(new Mutation {
Deletion = deletion
});
}
}
internal static bool MatchesDeletion(Target target, Deletion deletion)
{
if (deletion.Id.Equals(target.Id))
{
return(true);
}
if (deletion.Document is Target t)
{
return(t.Id == target.Id);
}
return(false);
}
void DeleteGameObject(string json)
{
Deletion deletion = JsonUtility.FromJson <Deletion>(json);
Debug.Log("%%%%%%%%%%%%%% DeleteGameObject from Java: " + deletion.id);
GameObject toDelete = instances[deletion.id];
// Failing to null these out causes a bug; the Destroy() method is too voracious.
toDelete.GetComponent <MeshCollider>().sharedMesh = null;
toDelete.GetComponent <MeshRenderer>().sharedMaterial = null;
toDelete.GetComponent <MeshFilter>().mesh = null;
instances.Remove(deletion.id);
Destroy(toDelete);
}
public void AddDeletion()
{
var bm = new BatchMutation();
var d1 = new Deletion();
d1.SlicePredicate = new SlicePredicate();
d1.SlicePredicate.ColumnNames.Add("c_name");
bm.AddDeletion("key1", cfs, d1);
Assert.Equal(1, bm["key1"].Count);
var d2 = new Deletion();
d2.SlicePredicate = new SlicePredicate();
d2.SlicePredicate.ColumnNames.Add("c_name2");
bm.AddDeletion("key1", cfs, d2);
Assert.Equal(2, bm["key1"]["Standard1"].Count);
}
internal async Task <bool> HandleReactionAsync(BaseSocketClient client, SocketReaction reaction)
{
bool valid = await RunChecksAsync(client, reaction).ConfigureAwait(false) && (!IsUserRestricted || Users.Any(x => x.Id == reaction.UserId));
if (Deletion.HasFlag(DeletionOptions.Invalids) && !valid)
{
await client.Rest.RemoveReactionAsync(reaction).ConfigureAwait(false);
}
if (Deletion.HasFlag(DeletionOptions.Valid) && valid)
{
await client.Rest.RemoveReactionAsync(reaction).ConfigureAwait(false);
}
return(valid);
}
public static Mutation CreateDeletedSuperColumnMutation(IEnumerable <FluentMutation> mutation)
{
var superColumn = mutation.Select(m => m.Column.GetPath().SuperColumn.ColumnName).FirstOrDefault();
var columnNames = mutation.Select(m => m.Column.ColumnName).ToList();
var deletion = new Deletion {
Timestamp = DateTimeOffset.Now.ToTimestamp(),
Super_column = superColumn,
Predicate = CreateSlicePredicate(columnNames)
};
return(new Mutation {
Deletion = deletion
});
}
public void AddDeletion()
{
var bm = new BatchMutation();
var d1 = new Deletion();
d1.SlicePredicate = new SlicePredicate();
d1.SlicePredicate.ColumnNames.Add("c_name");
bm.AddDeletion("key1", cfs, d1);
Assert.Equal(1, bm["key1"].Count);
var d2 = new Deletion();
d2.SlicePredicate = new SlicePredicate();
d2.SlicePredicate.ColumnNames.Add("c_name2");
bm.AddDeletion("key1", cfs, d2);
Assert.Equal(2, bm["key1"]["Standard1"].Count);
}
public static IEnumerable <Mutation> CreateDeletedSuperColumnMutation(IEnumerable <FluentMutation> mutation)
{
foreach (var col in mutation)
{
var superColumn = col.Column.GetPath().SuperColumn.ColumnName.TryToBigEndian();
var deletion = new Deletion {
Timestamp = col.ColumnTimestamp.ToCassandraTimestamp(),
Super_column = superColumn,
Predicate = CreateSlicePredicate(new[] { col.Column.ColumnName })
};
yield return(new Mutation {
Deletion = deletion
});
}
}
private async Task Delete()
{
await UsingTempFile(DefaultFileContents, async file =>
{
// Arrange
var modification = new Deletion(1, 3);
_fileModifierStep.File = file;
_fileModifierStep.Modifications = new List <Modification> {
modification
};
// Act
await _fileModifierStep.Run();
// Assert
var contents = await File.ReadAllTextAsync(file);
contents.ShouldBe(@"4
5
");
});
}
/// <summary>
/// Serves as a hash function for a particular type.
/// <see cref="GetHashCode"/> is suitable for use in hashing algorithms and data structures
/// like a hash table.
/// </summary>
/// <returns>A hash code for the current object.</returns>
public override int GetHashCode()
{
int result = Type.GetHashCode();
if (Type == PatchOperationType.Addition)
{
result = 29 * result + Addition.GetHashCode();
}
if (Type == PatchOperationType.Deletion)
{
result = 29 * result + Deletion.GetHashCode();
}
if (Type == PatchOperationType.Copy)
{
result = 29 * result + Copy.GetHashCode();
}
return(result);
}
public IActionResult Delete(string id, [FromBody] Deletion deletion)
{
Timecard timecard = Database.Find(id);
if (timecard != null)
{
if (timecard.Status != TimecardStatus.Draft && timecard.Status != TimecardStatus.Submitted)
{
return(StatusCode(409, new InvalidStateError()
{
}));
}
var transition = new Transition(deletion, TimecardStatus.Deleted);
timecard.Transitions.Add(transition);
Database.Remove(timecard);
return(Ok(transition));
}
else
{
return(NotFound());
}
}
public void deleteColumn(string keyspace, Object columnFamily, Object key, Object columnName)
{
client.set_keyspace(keyspace);
Mutation mutation = new Mutation();
SlicePredicate sp = new SlicePredicate();
sp.Column_names = (new[] { columnName }).ToByteArrayListFromCollection <object>();
Deletion deletion = new Deletion();
deletion.Predicate = sp;
//timestamp should be optional but its not
deletion.Timestamp = createTimestamp();
mutation.Deletion = deletion;
Dictionary <byte[], Dictionary <string, List <Mutation> > > mutation_map = new Dictionary <byte[], Dictionary <string, List <Mutation> > >();
Dictionary <string, List <Mutation> > columnFamilyKey = new Dictionary <string, List <Mutation> >();
List <Mutation> mutationList = new List <Mutation>();
mutationList.Add(mutation);
columnFamilyKey.Add(columnFamily.ToString(), mutationList);
mutation_map.Add(key.ToByteArray(), columnFamilyKey);
client.batch_mutate(mutation_map, consistencyLevel);
}
public override void GenerateCode(GeneratedMethod method, ISourceWriter writer)
{
writer.Write($"case {SpecificEvent.VariableType.FullNameInCode()} {SpecificEvent.Usage}:");
writer.IndentionLevel++;
if (AlwaysDeletes)
{
writer.Write("return null;");
}
CreationFrame?.GenerateCode(method, writer);
if (Apply != null)
{
if (AggregateType.GetConstructors().Any(x => !x.GetParameters().Any()))
{
writer.Write($"{Aggregate.Usage} ??= new {AggregateType.FullNameInCode()}();");
}
Apply.GenerateCode(method, writer);
}
if (Deletion != null)
{
writer.Write($"if ({Aggregate.Usage} == null) return null;");
Deletion.GenerateCode(method, writer);
}
writer.Write($"return {Aggregate.Usage};");
writer.IndentionLevel--;
Next?.GenerateCode(method, writer);
}
private long IgnoredDeletionsCount(Deletion deletion)
{
return(deletion.Ignored());
}
private string DeletionAuthor(Deletion deletion)
{
return(deletion.Email());
}
public static MiddleSnakeResult Middle(byte[] original, byte[] patched, Bounds bounds = null)
{
// Set bounds to default unless they have been specified. (-1 as 0 offset but +1 as extra row added to represent starting before the byte arays so cancel out)
bounds = bounds ?? new Bounds(new Point(0, 0), new Point(patched.Length, original.Length));
// Handle base cases with zero area
if (bounds.IsVerticalBaseCase())
{
// As the lower and upper x values are the same, this implies the only move is down which denotes a deletion.
// The index of the deletion corresponded to the x position at the start of the move.
Edit edit = new Deletion(bounds.ToIndex(), bounds.Lower.X);
// Increment the lower y value of the bounds and check that it still has an area
Bounds upper = new Bounds(new Point(bounds.Lower.X, bounds.Lower.Y + 1), bounds.Upper);
if (upper.Lower == upper.Upper)
{
upper = null;
}
// Return the new middle snake
return(new MiddleSnakeResult(edit, null, upper));
}
if (bounds.IsHorizontalBaseCase())
{
// Across => Insertion
Edit edit = new Insertion(bounds.ToIndex(), bounds.Lower.X, patched[bounds.Lower.X]);
Bounds upper = new Bounds(new Point(bounds.Lower.X + 1, bounds.Upper.Y), bounds.Upper);
if (upper.Lower == upper.Upper)
{
upper = null;
}
return(new MiddleSnakeResult(edit, null, upper));
}
// Store the size of the bounds.
int N = bounds.Upper.Y - bounds.Lower.Y;
int M = bounds.Upper.X - bounds.Lower.X;
// Create an array to store x-distances along k-lines
EditDistanceArray V = new EditDistanceArray(N, M);
// Keep checking until a match must have been found
for (int d = 0; d <= (N + M + 1) / 2; d++)
{
// Run the algorithm forwards and backwards
foreach (Direction direction in Enum.GetValues(typeof(Direction)))
{
// Check and update every other k-line within the current bounds.
for (int k = -d; k <= d; k += 2)
{
// Make sure the k-line is valid.
bool valid = N <M && k <= M && (k != -d && k > -N || k == -d && k >= -N) ||
N> M && k >= -N && (k != d && k < M || k == d && k <= M) ||
N == M && k >= -N && k <= M;
/*
* bool valid = ((N < M && k != -d && k > -N && k <= M) ||
* (N < M && k == -d && k >= -N && k <= M) ||
* (N > M && k != d && k >= -N && k < M) ||
* (N > M && k == d && k >= -N && k <= M) ||
* (N == M && k >= -N && k <= M))
* ? true
* : false;
*/
/*
* if (N < M && k != -d && k > -N && k <= M)
* {
* valid = true;
* }
*
* if (N < M && k == -d && k >= -N && k <= M)
* {
* valid = true;
* }
*
* if (N > M && k != d && k >= -N && k < M)
* {
* valid = true;
* }
*
* if (N > M && k == d && k >= -N && k <= M)
* {
* valid = true;
* }
*
* if (N == M && k >= -N && k <= M)
* {
* valid = true;
* }
*/
if (valid)
{
// Check if the x-distance is larger by moving down/up or right/left and store it
bool down = ((k == -d) || (k != d) && V.GetX(k - 1, direction) < V.GetX(k + 1, direction));
int startX;
int startY;
// Update the current k-lines new x-distance
if (down)
{
startX = (int)V.GetX(k + 1, direction);
startY = (int)V.GetY(k + 1, direction);
V.SetX(k, direction, startX);
}
else
{
startX = (int)V.GetX(k - 1, direction);
startY = (int)V.GetY(k - 1, direction);
V.SetX(k, direction, startX + 1);
}
int currentX = (int)V.GetX(k, direction);
int currentY = (int)V.GetY(k, direction);
int currentSnake = Snake.Length(original, patched, bounds, (int)V.GetX(k, direction), (int)V.GetY(k, direction), direction);
int endX = currentX + currentSnake;
int endY = currentY + currentSnake;
// Update the current k-lines x-distance with the snake length from that point
V.SetX(k, direction, endX);
int globalEndX;
int globalEndY;
if (direction == Direction.Forward)
{
globalEndX = endX + bounds.Lower.X;
globalEndY = endY + bounds.Lower.Y;
}
else
{
globalEndX = bounds.Upper.X - endX;
globalEndY = bounds.Upper.Y - endY;
}
bool specialCase = false;
if (direction == Direction.Forward)
{
if (globalEndX == bounds.Upper.X && globalEndY == bounds.Upper.Y)
{
specialCase = true;
}
}
else
{
if (globalEndX == bounds.Lower.X && globalEndY == bounds.Lower.Y)
{
specialCase = true;
}
}
// Check if the middle snake reached the end of the bounds in one movement
if (specialCase)
{
Edit edit = null;
// Handle exact matches (No differences)
if (startY == -1)
{
return(new MiddleSnakeResult(null, null, null));
}
if (direction == Direction.Forward)
{
// Check if the move was down or across
if (down)
{
edit = new Deletion(bounds.ToIndex(), bounds.Lower.X + startX);
}
else
{
edit = new Insertion(bounds.ToIndex(), bounds.Lower.X + startX, patched[bounds.Lower.X + startX]);
}
}
else
{
if (down)
{
edit = new Deletion(bounds.ToIndex(), bounds.Lower.Y + currentY);
}
else
{
edit = new Insertion(bounds.ToIndex(), bounds.Lower.Y + currentY, patched[bounds.Lower.Y + currentY]);
}
}
return(new MiddleSnakeResult(edit, null, null));
}
// Check if there is an overlap along the current k-line from each end
if (V.Overlapped(k, direction))
{
// Values to store when returning the result of the middle snake.
Bounds upper;
Bounds lower;
if (direction == Direction.Reverse)
{
// Invert the positions as they are from the bottom right not the top left
startX = M - startX;
startY = N - startY;
endX = M - endX;
endY = N - endY;
// Lower bounds are from the lower bound point to snake end point
lower = new Bounds(new Point(bounds.Lower.X, bounds.Lower.Y), new Point(endX + bounds.Lower.X, endY + bounds.Lower.Y));
// Upper bounds are from the finish to the end
upper = new Bounds(new Point(endX + bounds.Lower.X, endY + bounds.Lower.Y), new Point(bounds.Upper.X, bounds.Upper.Y));
}
else
{
lower = new Bounds(new Point(bounds.Lower.X, bounds.Lower.Y), new Point(endX + bounds.Lower.X, endY + bounds.Lower.Y));
upper = new Bounds(new Point(endX + bounds.Lower.X, endY + bounds.Lower.Y), new Point(bounds.Upper.X, bounds.Upper.Y));
}
if (lower.Lower.Equals(lower.Upper))
{
lower = null;
}
if (upper.Lower.Equals(upper.Upper))
{
upper = null;
}
return(new MiddleSnakeResult(null, lower, upper));
}
}
}
}
}
return(null);
}
private long DeletionsCount(Deletion deletion)
{
return(deletion.Counted());
}
public static int Main(string[] args)
{
int retval = 0;
SBMLNamespaces sbmlns = new SBMLNamespaces(3, 1, "comp", 1);
// create the document
SBMLDocument document = new SBMLDocument(sbmlns);
// create the Model
Model model = document.createModel();
// create a replacement parameter
Parameter parameter = model.createParameter();
parameter.setId("x");
parameter.setConstant(true);
// create a parameter to be a conversion factor
Parameter param2 = model.createParameter();
param2.setId("x_conv");
param2.setMetaId("_110013");
param2.setConstant(true);
// create a parameter to be a conversion factor
Parameter param3 = model.createParameter();
param3.setId("lcf");
param3.setConstant(true);
// Convert parameter to the plugin version so we can add the new attributes and replacements to it.
CompSBasePlugin splugin = (CompSBasePlugin)(parameter.getPlugin("comp"));
// Add a replaced element.
ReplacedElement rep1 = splugin.createReplacedElement();
int rv = rep1.setSubmodelRef("submod1");
rv = rep1.setConversionFactor("x_conv");
rv = rep1.setIdRef("param1");
// Add a second replaced element in a different way.
ReplacedElement rep2 = new ReplacedElement();
rv = rep2.setSubmodelRef("submod2");
rv = rep2.setDeletion("del1");
rv = splugin.addReplacedElement(rep2);
//Now create a replaced element that points into a submodel.
rep2.unsetDeletion();
rep2.setIdRef("submod2");
SBaseRef sbr5 = rep2.createSBaseRef();
sbr5.setIdRef("submodelG");
SBaseRef sbr6 = sbr5.createSBaseRef();
sbr6.setIdRef("buriedElement");
splugin.addReplacedElement(rep2);
// Create a submodel
CompModelPlugin mplugin = (CompModelPlugin)(model.getPlugin("comp"));
CompSBMLDocumentPlugin compdoc = (CompSBMLDocumentPlugin)(document.getPlugin("comp"));
compdoc.setRequired(true);
ModelDefinition moddef1 = compdoc.createModelDefinition();
moddef1.setId("Mod1");
Parameter m1param1 = moddef1.createParameter();
m1param1.setId("param1");
m1param1.setConstant(true);
Parameter m1param2 = moddef1.createParameter();
m1param2.setId("param2");
m1param2.setConstant(false);
m1param2.setValue(3.2);
ModelDefinition moddef2 = new ModelDefinition();
moddef2.setId("Mod2");
Parameter subparam2 = moddef2.createParameter();
subparam2.setId("subparam2");
subparam2.setConstant(false);
compdoc.addModelDefinition(moddef2);
ExternalModelDefinition extmod1 = compdoc.createExternalModelDefinition();
extmod1.setId("ExtMod1");
extmod1.setSource("urn:miriam:biomodels.db:BIOMD0000000127");
ExternalModelDefinition extmod2 = new ExternalModelDefinition();
extmod2.setId("ExtMod2");
extmod2.setSource("otherfile.xml");
extmod2.setModelRef("modelnamethere");
extmod2.setMd5("406022s908ge74sklj");
compdoc.addExternalModelDefinition(extmod2);
Submodel submod1 = mplugin.createSubmodel();
submod1.setId("submod1");
submod1.setModelRef("Mod1");
Deletion del1 = submod1.createDeletion();
del1.setId("deletionA");
del1.setIdRef("param2");
Submodel submod2 = new Submodel();
submod2.setId("submod2");
submod2.setModelRef("ExtMod1");
submod2.setSubstanceConversionFactor("subcf");
submod2.setTimeConversionFactor("tcf");
submod2.setExtentConversionFactor("xtf");
Deletion del2 = new Deletion();
del2.setId("deletionB");
del2.setMetaIdRef("_0010110");
rv = submod2.addDeletion(del2);
del2.setId("deletionC");
del2.unsetMetaIdRef();
del2.setPortRef("port2");
rv = submod2.addDeletion(del2);
del2.unsetId();
del2.unsetPortRef();
del2.setUnitRef("mph");
rv = submod2.addDeletion(del2);
del2.unsetUnitRef();
del2.setIdRef("submodG");
SBaseRef sbr = del2.createSBaseRef();
sbr.setIdRef("element5");
rv = submod2.addDeletion(del2);
Deletion del3 = new Deletion();
del3.setIdRef("submodG");
SBaseRef sbr2 = new SBaseRef();
sbr2.setIdRef("subsubmodQ");
SBaseRef subsbr = sbr2.createSBaseRef();
subsbr.setPortRef("toBdel");
del3.setSBaseRef(sbr2);
submod2.addDeletion(del3);
mplugin.addSubmodel(submod2);
Port port1 = mplugin.createPort();
port1.setId("port1");
port1.setMetaIdRef("_110013");
Port port2 = new Port();
port2.setId("port2");
port2.setIdRef("x");
mplugin.addPort(port2);
port2.setId("port3");
port2.setIdRef("submod2");
port2.setSBaseRef(sbr2);
mplugin.addPort(port2);
libsbml.writeSBMLToFile(document, "comp_example1.xml");
document = libsbml.readSBMLFromFile("comp_example1.xml");
if (document == null)
{
Console.WriteLine("Error reading back in file.");
retval = -1;
}
else
{
document.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, false);
document.checkConsistency();
if (document.getErrorLog().getNumFailsWithSeverity(2) > 0 ||
document.getErrorLog().getNumFailsWithSeverity(3) > 0)
{
OStringStream stream = new OStringStream();
document.printErrors(stream);
Console.WriteLine("Errors encoutered when round-tripping SBML file: \n" +
stream.str());
retval = -1;
}
libsbml.writeSBMLToFile(document, "comp_example1_rt.xml");
}
return(retval);
}
public MovieClip(FileData f) : this()
{
id = f.readInt();
unk1 = f.readInt();
unk2 = f.readInt();
int numLabels = f.readInt();
int numFrames = f.readInt();
int numKeyframes = f.readInt();
unk3 = f.readInt();
for (int i = 0; i < numLabels; i++)
{
f.skip(0x08);
Label label = new Label();
label.nameId = f.readInt();
label.startFrame = f.readInt();
label.unk1 = f.readInt();
labels.Add(label);
}
int totalFrames = numFrames + numKeyframes;
for (int frameId = 0; frameId < totalFrames; frameId++)
{
ChunkType frameType = (ChunkType)f.readInt();
f.skip(0x04);
Frame frame = new Frame();
frame.id = f.readInt();
int numChildren = f.readInt();
for (int childId = 0; childId < numChildren; childId++)
{
ChunkType childType = (ChunkType)f.readInt();
int childSize = f.readInt();
if (childType == ChunkType.ObjectPlacement)
{
Placement placement = new Placement();
placement.objectId = f.readInt();
placement.placementId = f.readInt();
placement.unk1 = f.readInt();
placement.nameId = f.readInt();
placement.unk2 = (short)f.readShort();
placement.unk3 = (short)f.readShort();
placement.mcObjectId = (short)f.readShort();
placement.unk4 = (short)f.readShort();
placement.transformFlags = (short)f.readShort();
placement.transformId = (short)f.readShort();
placement.positionFlags = (short)f.readShort();
placement.positionId = (short)f.readShort();
placement.colorId1 = f.readInt();
placement.colorId2 = f.readInt();
placement.numF037s = f.readInt();
placement.numF014s = f.readInt();
int numUnhandled = placement.numF037s + placement.numF014s;
for (int i = 0; i < numUnhandled; i++)
{
f.skip(0x04);
int size = f.readInt();
f.skip(size * 4);
}
frame.placements.Add(placement);
}
else if (childType == ChunkType.ObjectDeletion)
{
Deletion deletion = new Deletion();
deletion.unk1 = f.readInt();
deletion.mcObjectId = (short)f.readShort();
deletion.unk2 = (short)f.readShort();
frame.deletions.Add(deletion);
}
else if (childType == ChunkType.Action)
{
Action action = new Action();
action.actionId = f.readInt();
action.unk1 = f.readInt();
frame.actions.Add(action);
}
}
if (frameType == ChunkType.Keyframe)
{
keyframes.Add(frame);
}
else
{
frames.Add(frame);
}
}
}
public static int Main(string[] args)
{
int retval = 0;
SBMLNamespaces sbmlns = new SBMLNamespaces(3, 1, "comp", 1);
// create the document
SBMLDocument document = new SBMLDocument(sbmlns);
// create the Model
Model model = document.createModel();
// create a replacement parameter
Parameter parameter = model.createParameter();
parameter.setId("x");
parameter.setConstant(true);
// create a parameter to be a conversion factor
Parameter param2 = model.createParameter();
param2.setId("x_conv");
param2.setMetaId("_110013");
param2.setConstant(true);
// create a parameter to be a conversion factor
Parameter param3 = model.createParameter();
param3.setId("lcf");
param3.setConstant(true);
// Convert parameter to the plugin version so we can add the new attributes and replacements to it.
CompSBasePlugin splugin = (CompSBasePlugin) (parameter.getPlugin("comp"));
// Add a replaced element.
ReplacedElement rep1 = splugin.createReplacedElement();
int rv = rep1.setSubmodelRef("submod1");
rv = rep1.setConversionFactor("x_conv");
rv = rep1.setIdRef("param1");
// Add a second replaced element in a different way.
ReplacedElement rep2 = new ReplacedElement();
rv = rep2.setSubmodelRef("submod2");
rv = rep2.setDeletion("del1");
rv = splugin.addReplacedElement(rep2);
//Now create a replaced element that points into a submodel.
rep2.unsetDeletion();
rep2.setIdRef("submod2");
SBaseRef sbr5 = rep2.createSBaseRef();
sbr5.setIdRef("submodelG");
SBaseRef sbr6 = sbr5.createSBaseRef();
sbr6.setIdRef("buriedElement");
splugin.addReplacedElement(rep2);
// Create a submodel
CompModelPlugin mplugin = (CompModelPlugin) (model.getPlugin("comp"));
CompSBMLDocumentPlugin compdoc = (CompSBMLDocumentPlugin) (document.getPlugin("comp"));
compdoc.setRequired(true);
ModelDefinition moddef1 = compdoc.createModelDefinition();
moddef1.setId("Mod1");
Parameter m1param1 = moddef1.createParameter();
m1param1.setId("param1");
m1param1.setConstant(true);
Parameter m1param2 = moddef1.createParameter();
m1param2.setId("param2");
m1param2.setConstant(false);
m1param2.setValue(3.2);
ModelDefinition moddef2 = new ModelDefinition();
moddef2.setId("Mod2");
Parameter subparam2 = moddef2.createParameter();
subparam2.setId("subparam2");
subparam2.setConstant(false);
compdoc.addModelDefinition(moddef2);
ExternalModelDefinition extmod1 = compdoc.createExternalModelDefinition();
extmod1.setId("ExtMod1");
extmod1.setSource("urn:miriam:biomodels.db:BIOMD0000000127");
ExternalModelDefinition extmod2 = new ExternalModelDefinition();
extmod2.setId("ExtMod2");
extmod2.setSource("otherfile.xml");
extmod2.setModelRef("modelnamethere");
extmod2.setMd5("406022s908ge74sklj");
compdoc.addExternalModelDefinition(extmod2);
Submodel submod1 = mplugin.createSubmodel();
submod1.setId("submod1");
submod1.setModelRef("Mod1");
Deletion del1 = submod1.createDeletion();
del1.setId("deletionA");
del1.setIdRef("param2");
Submodel submod2 = new Submodel();
submod2.setId("submod2");
submod2.setModelRef("ExtMod1");
submod2.setSubstanceConversionFactor("subcf");
submod2.setTimeConversionFactor("tcf");
submod2.setExtentConversionFactor("xtf");
Deletion del2 = new Deletion();
del2.setId("deletionB");
del2.setMetaIdRef("_0010110");
rv = submod2.addDeletion(del2);
del2.setId("deletionC");
del2.unsetMetaIdRef();
del2.setPortRef("port2");
rv = submod2.addDeletion(del2);
del2.unsetId();
del2.unsetPortRef();
del2.setUnitRef("mph");
rv = submod2.addDeletion(del2);
del2.unsetUnitRef();
del2.setIdRef("submodG");
SBaseRef sbr = del2.createSBaseRef();
sbr.setIdRef("element5");
rv = submod2.addDeletion(del2);
Deletion del3 = new Deletion();
del3.setIdRef("submodG");
SBaseRef sbr2 = new SBaseRef();
sbr2.setIdRef("subsubmodQ");
SBaseRef subsbr = sbr2.createSBaseRef();
subsbr.setPortRef("toBdel");
del3.setSBaseRef(sbr2);
submod2.addDeletion(del3);
mplugin.addSubmodel(submod2);
Port port1 = mplugin.createPort();
port1.setId("port1");
port1.setMetaIdRef("_110013");
Port port2 = new Port();
port2.setId("port2");
port2.setIdRef("x");
mplugin.addPort(port2);
port2.setId("port3");
port2.setIdRef("submod2");
port2.setSBaseRef(sbr2);
mplugin.addPort(port2);
libsbml.writeSBMLToFile(document, "comp_example1.xml");
document = libsbml.readSBMLFromFile("comp_example1.xml");
if (document == null)
{
Console.WriteLine("Error reading back in file.");
retval = -1;
}
else
{
document.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, false);
document.checkConsistency();
if (document.getErrorLog().getNumFailsWithSeverity(2) > 0 ||
document.getErrorLog().getNumFailsWithSeverity(3) > 0)
{
OStringStream stream = new OStringStream();
document.printErrors(stream);
Console.WriteLine("Errors encoutered when round-tripping SBML file: \n" +
stream.str());
retval = -1;
}
libsbml.writeSBMLToFile(document, "comp_example1_rt.xml");
}
return retval;
}
public override void Apply(byte **p, int length, int width, int height)
{
byte *ptr = *p;
int bpp = length / width / height;
int stride = length / height;
var tmpOnes = new List <int>();
for (int i = stride + bpp; i < stride * height - stride - bpp; i += bpp)
{
if (ptr[i] == One)
{
tmpOnes.Add(i);
}
}
int[] ones = tmpOnes.ToArray();
bool hasDeleted = true;
while (hasDeleted)
{
hasDeleted = false;
foreach (int i in ones)
{
if (ptr[i + 3] == Zero || ptr[i + stride] == Zero ||
ptr[i - 3] == Zero || ptr[i - stride] == Zero)
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Two;
}
}
foreach (int i in ones)
{
if (ptr[i] != Two && (
ptr[i + stride + 3] == Zero || ptr[i + stride - 3] == Zero ||
ptr[i - stride + 3] == Zero || ptr[i - stride - 3] == Zero))
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Three;
}
}
foreach (int i in ones)
{
if (Fours.Contains(ComputeSum(i)))
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Four;
}
}
foreach (int i in ones)
{
if (ptr[i] == Four && Deletion.Contains(ComputeSum(i)))
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Zero;
}
}
foreach (int i in ones)
{
if (ptr[i] == Two && Deletion.Contains(ComputeSum(i)))
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Zero;
hasDeleted = true;
}
}
foreach (int i in ones)
{
if (ptr[i] == Three && Deletion.Contains(ComputeSum(i)))
{
ptr[i] = ptr[i + 1] = ptr[i + 2] = Zero;
hasDeleted = true;
}
}
var tmp = new List <int>(ones.Length >> 1);
for (int i = 0; i < ones.Length; i++)
{
if (ptr[ones[i]] != Zero)
{
tmp.Add(ones[i]);
}
}
ones = tmp.ToArray();
}
int ComputeSum(int sumOffset)
{
int sum = 0;
if (ptr[sumOffset + bpp] != Zero)
{
sum += Matrix[5];
}
if (ptr[sumOffset - bpp] != Zero)
{
sum += Matrix[3];
}
sumOffset += stride;
if (ptr[sumOffset + bpp] != Zero)
{
sum += Matrix[2];
}
if (ptr[sumOffset] != Zero)
{
sum += Matrix[1];
}
if (ptr[sumOffset - bpp] != Zero)
{
sum += Matrix[0];
}
sumOffset -= stride + stride;
if (ptr[sumOffset + bpp] != Zero)
{
sum += Matrix[8];
}
if (ptr[sumOffset] != Zero)
{
sum += Matrix[7];
}
if (ptr[sumOffset - bpp] != Zero)
{
sum += Matrix[6];
}
return(sum);
}
}
