/// <summary>
/// IMPLEMENTS IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var res = request.Results.Cast <ClusterEvaluationParameterResult>();
for (int n = 0; n < Repetitions.Count; n++)
{
int closure = n;
int humanIndex = n + 1;
res.Add("Rep " + humanIndex + "\\Number of clusters", EColumn.None, z => (z.Repetitions[closure].Clusters) != null ? z.Repetitions[closure].Clusters.Length : 0);
foreach (string k in this.Repetitions[0].ClustererStatistics.Keys) // shouldn't use "this" or "0"
{
string closure2 = k;
res.Add("Rep " + humanIndex + "\\" + closure2, EColumn.None, z => z.Repetitions[closure].ClustererStatistics.GetOrNan(closure2));
}
}
res.Add("Rep AVG\\Number of clusters", EColumn.None, z => z.Repetitions.Average(zz => (zz.Clusters != null) ? zz.Clusters.Length : 0));
foreach (string k in this.Repetitions[0].ClustererStatistics.Keys) // shouldn't use "this" or "0"
{
string closure = k;
res.Add("Rep AVG\\" + closure, EColumn.None, z => z.Repetitions.Average(zz => zz.ClustererStatistics.GetOrNan(closure)));
}
}
public override void GetXColumns(CustomColumnRequest request)
{
var result = request.Results.Cast <_btnEditDefaults_Click__Kvp>();
result.Add("Key", z => this._arg.Key);
result.Add("Value", z => Column.AsString(this._arg.Value, EListDisplayMode.CountAndContent));
}
public override void GetXColumns(CustomColumnRequest request)
{
var results = request.Results.Cast <ConfigurationBase <TAlgo, TArgs, TResults, TTracker> >();
results.Add("Status", EColumn.Visible, z => z.Status, z =>
{
switch (z.Status)
{
case EAlgoStatus.Pending:
return(Color.Olive);
case EAlgoStatus.Completed:
return(Color.Green);
case EAlgoStatus.Failed:
return(Color.Red);
case EAlgoStatus.Disposed:
return(Color.Magenta);
default:
throw new ArgumentOutOfRangeException();
}
});
}
/// <summary>
/// Implements IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var result = request.Results.Cast <AlgoBase>();
result.Add("R", z => z.Script != null ? 1 : 0);
result.Add("File", z => z.Script?.FileName);
}
public void GetXColumns(CustomColumnRequest request)
{
ColumnCollection <ColumnValuePair> result = request.Results.Cast <ColumnValuePair>();
result.Add("Field", EColumn.Visible, z => z.Field, z => z.ColumnColour);
result.Add("Value", EColumn.Visible, z => z.Value, z => z.Colour);
}
public override void GetXColumns(CustomColumnRequest request)
{
var columns = request.Results.Cast <GroupInfoBase>();
columns.Add("Colour", z => ColourHelper.ColourToName(z.Colour), z => z.Colour);
columns.Add("Light colour", z => ColourHelper.ColourToName(z.ColourLight), z => z.ColourLight);
columns.Add("Graph icon", z => z.GraphIcon, z => z.Colour);
}
public override void GetXColumns(CustomColumnRequest request)
{
var list = request.Results.Cast <_btnEditColumns_Click__ColumnDisplay>();
list.Add("Display index", EColumn.Visible, z => z._col.DisplayIndex);
list.Add("Display name", EColumn.Visible, z => z._col.DisplayName);
list.Add("Visible", EColumn.Visible, z => z._col.Visible);
list.Add("Width", EColumn.Visible, z => z._col.Width);
}
/// <summary>
/// IMPLEMENTS IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var result = request.Results.Cast <Pathway>();
result.Add("Compounds with peaks", EColumn.None, λ => λ.Compounds.Where(z => z.Annotations.Count != 0));
result.Add("Related pathways", EColumn.None, λ => λ.RelatedPathways);
request.Core._pathwaysMeta.ReadAllColumns <Pathway>(z => z.MetaInfo, result);
}
public override void GetXColumns(CustomColumnRequest request)
{
// TODO: Put this back!
//foreach (var kvp in this.AssignmentStatistics.Keys)
//{
// var closure = kvp;
// cols.Add("Assignment statistic\\" + closure, EColumn.IsStatistic, z => z.AssignmentStatistics.GetOrNan(closure));
//}
}
public override void GetXColumns(CustomColumnRequest request)
{
var cols = request.Results.Cast <ColumnWrapper>();
foreach (ClusterEvaluationParameterResult v in this._results.Results)
{
var closure = v;
cols.Add(this._results.Configuration.ParameterName + " = " + closure.DisplayName, EColumn.None, z => z.Column.GetRow(closure));
}
}
/// <summary>
/// IMPELEMENTS IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var columns = request.Results.Cast <Compound>();
columns.Add("Annotations\\As peaks", EColumn.Visible, λ => λ.Annotations.Select(z => z.Peak));
columns.Add("Annotations\\As statuses", EColumn.None, λ => λ.Annotations.Select(z => z.Status));
columns.Add("Annotations\\As compounds", EColumn.None, λ => λ.Annotations.Select(z => z.Compound));
request.Core._compoundsMeta.ReadAllColumns <Compound>(z => z.MetaInfo, columns);
}
/// <summary>
/// IMPLEMENTS IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var columns = request.Results.Cast <Peak>();
Core core = request.Core;
columns.Add("Cluster assignments", EColumn.None, λ => λ.FindAssignments(core).Select(z => z.Cluster));
columns.Add(ID_COLUMN_CLUSTERCOMBINATION, EColumn.Advanced, z => StringHelper.ArrayToString(z.FindAssignments(core).Select(zz => zz.Cluster)));
columns.Add("Cluster assignments\\As scores", EColumn.Advanced, λ => λ.FindAssignments(core).Select(z => z.Score));
columns.Add("Cluster assignments\\Unique", EColumn.Advanced, λ => new HashSet <Cluster>(λ.FindAssignments(core).Select(z => z.Cluster)).ToArray());
columns.Add("Cluster assignments\\Grouped", EColumn.Advanced, λ => StringHelper.ArrayToString(λ.FindAssignments(core).OrderBy(z => z.Vector.Group?.DisplayPriority).Select(z => (z.Vector.Group != null ? (z.Vector.Group.DisplayShortName + "=") : "") + z.Cluster.ShortName)));
foreach (GroupInfo group in core.Groups)
{
var closure = group;
columns.Add("Clusters assignments\\For " + group.DisplayName, EColumn.Advanced, λ => λ.FindAssignments(core).Where(z => z.Vector.Group == closure).Select(z => z.Cluster).ToArray(), z => closure.Colour);
columns.Add("Clusters assignments\\For " + group.DisplayName + " (scores)", EColumn.Advanced, λ => λ.FindAssignments(core).Where(z => z.Vector.Group == closure).Select(z => z.Score).ToArray(), z => closure.Colour);
}
foreach (UserFlag flag in core.Options.UserFlags)
{
var closure = flag;
columns.Add("Flags\\" + flag, EColumn.Advanced, λ => λ.UserFlags.Contains(closure) ? closure.DisplayName : string.Empty, z => closure.Colour);
}
columns.Add("Cluster assignments\\For no group", EColumn.Advanced, λ => λ.FindAssignments(core).Where(z => z.Vector.Group == null).Select(z => z.Cluster).ToList());
columns.Add("Cluster assignments\\For no group (scores)", EColumn.Advanced, λ => λ.FindAssignments(core).Where(z => z.Vector.Group == null).Select(z => z.Score).ToList());
columns.Add("Flags\\All", EColumn.None, λ => StringHelper.ArrayToString(λ.UserFlags), z => z.UserFlags.Count == 1 ? z.UserFlags.First().Colour : Color.Black);
foreach (ConfigurationStatistic stat in core.Statistics.WhereEnabled())
{
var closure = stat;
columns.Add(
"Statistic\\" + stat.ToString(),
EColumn.IsStatistic,
λ => λ.GetStatistic(closure),
z => UiControls.StatisticColour(z.GetStatistic(closure), stat.Results.Min, stat.Results.Max));
}
columns.Add("Annotations\\As compounds", EColumn.Advanced, λ => λ.Annotations.Select(λλ => λλ.Compound));
columns.Add("Annotations\\As adducts", EColumn.Advanced, λ => λ.Annotations.Select(λλ => λλ.Adduct));
columns.Add("Annotations\\As statuses", EColumn.Advanced, λ => λ.Annotations.Select(λλ => λλ.Status));
core._peakMeta.ReadAllColumns <Peak>(z => z.MetaInfo, columns);
foreach (PeakFilter fi in core.PeakFilters)
{
var closure = fi;
columns.Add("Passes filter\\" + fi.ToString(), EColumn.Advanced, z => fi.Test(z));
}
}
/// <summary>
/// IMPLEMENTS IVisualisable
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
ColumnCollection <Cluster> result = request.Results.Cast <Cluster>();
Core core = request.Core;
result.Add("Assignments\\As peaks", EColumn.None, λ => λ.Assignments.Peaks.ToArray());
result.Add("Assignments\\As scores", EColumn.Advanced, λ => λ.Assignments.Scores.ToArray());
foreach (GroupInfo group in core.Groups)
{
GroupInfo closure = group;
result.Add(
"Assignments\\For " + group.DisplayName,
EColumn.None,
λ => λ.Assignments.List.Where(z => z.Vector.Group == closure).Select(z => z.Cluster).ToArray(),
z => closure.Colour);
}
foreach (UserFlag flag in core.Options.UserFlags)
{
UserFlag closure = flag;
result.Add(
"Flags\\" + flag,
EColumn.Advanced,
λ => λ.CommentFlags.ContainsKey(closure) ? λ.CommentFlags[closure] : 0,
z => closure.Colour);
}
result.Add("Flags\\Summary", EColumn.None, λ => λ.CommentFlags.Select(z => z.Key + " = " + z.Value), z => z.CommentFlags.Count != 1 ? Color.Black : z.CommentFlags.Keys.First().Colour);
foreach (ConfigurationStatistic stat in core.Statistics.WhereEnabled())
{
ConfigurationStatistic closure = stat;
result.Add("Average Statistic\\" + closure, EColumn.IsStatistic, λ => λ.Statistics.GetOrNan(closure));
}
foreach (string stat in core.GetClusterStatistics()) // TODO: No!
{
string closure = stat;
result.Add("Cluster statistic\\" + closure, EColumn.IsStatistic, λ => λ.ClusterStatistics.GetOrNan(closure));
}
}
public void GetXColumns(CustomColumnRequest request)
{
ColumnCollection <Association <T> > results = request.Results.Cast <Association <T> >();
// Add association as-is (don't include a folder before it!)
results.AddRange(ColumnManager.AddSubObject <Association <T> >(EColumn.Advanced, EColumn.Visible, request.Core, "", z => z.Associated, typeof(T)));
// Add extra columns from original request
if (this.OriginalRequest?.ExtraColumns != null)
{
for (int n = 0; n < this.OriginalRequest.ExtraColumns.Count; ++n)
{
int closure = n;
Tuple <string, string> c = this.OriginalRequest.ExtraColumns[n];
results.Add(new Column <Association <T> >(c.Item1, EColumn.Visible, c.Item2, z => z.GetExtraColumnValue(closure), z => Color.Blue));
}
}
request.NoAutomaticColumns = true; // Else conflicts
}
/// <summary>
/// IMPLEMENTS IVisualisable.
/// </summary>
public override void GetXColumns(CustomColumnRequest request)
{
var result = request.Results.Cast <UserFlag>();
result.Add("Colour", EColumn.None, z => ColourHelper.ColourToName(z.Colour), z => z.Colour);
}
public override void GetXColumns(CustomColumnRequest request)
{
ColumnCollection <Annotation> results = request.Results.Cast <Annotation>();
request.Core._annotationsMeta.ReadAllColumns <Annotation>(z => z.Meta, results);
}
public override void GetXColumns(CustomColumnRequest request)
{
base.GetXColumns(request);
request.Core._peakMeta.ReadAllColumns <ObservationInfo>(z => z.MetaInfo, request.Results);
}
/// <summary>
/// STATIC
/// Gets columns
/// </summary>
public virtual void GetXColumns(CustomColumnRequest request)
{
}
