private IEnumerable <int> GetReplicateIndices(Func <int, ChromFileInfoId> getFileId)
{
var chromatograms = _document.Settings.MeasuredResults.Chromatograms;
if (ReplicateOrder == SummaryReplicateOrder.document && null == OrderByReplicateAnnotation)
{
for (int iResult = 0; iResult < chromatograms.Count; iResult++)
{
yield return(iResult);
}
}
else
{
// Create a list of tuple's that will sort according to user's options.
// The sort is optionally by an annotation value, and then optionally acquired time,
// and finally document order.
var listIndexFile = new List <Tuple <object, DateTime, int> >();
AnnotationDef orderByReplicateAnnotationDef = null;
if (null != OrderByReplicateAnnotation)
{
orderByReplicateAnnotationDef = _document.Settings.DataSettings.AnnotationDefs.FirstOrDefault(
annotationDef => annotationDef.Name == OrderByReplicateAnnotation);
}
for (int iResult = 0; iResult < chromatograms.Count; iResult++)
{
var chromSet = _document.Settings.MeasuredResults.Chromatograms[iResult];
ChromFileInfoId fileId = getFileId(iResult);
ChromFileInfo fileInfo = (fileId != null ? chromSet.GetFileInfo(fileId) : null);
object annotationValue = null;
DateTime replicateTime = DateTime.MaxValue;
if (null != orderByReplicateAnnotationDef)
{
annotationValue = chromSet.Annotations.GetAnnotation(orderByReplicateAnnotationDef);
}
if (null != fileInfo && ReplicateOrder == SummaryReplicateOrder.time)
{
replicateTime = fileInfo.RunStartTime ?? DateTime.MaxValue;
}
listIndexFile.Add(new Tuple <object, DateTime, int>(annotationValue, replicateTime, iResult));
}
listIndexFile.Sort();
foreach (var tuple in listIndexFile)
{
yield return(tuple.Item3);
}
}
}
private bool IsCachedFile(SrmDocument doc, ChromFileInfo info)
{
return(doc.Settings.MeasuredResults.IsCachedFile(info.FilePath));
}
