//*** Protein Ingredients ****//
public void AddProteinIngredientToCPUBuffer(Ingredient ingredient, List <Atom> atoms, List <List <Vector4> > clusterLevels = null)
{
if (SceneHierarchy.Contains(ingredient.path))
{
throw new Exception("Invalid protein path: " + ingredient.path);
}
if (ProteinIngredientNames.Contains(ingredient.path))
{
throw new Exception("Invalid protein path: " + ingredient.path);
}
if (clusterLevels != null)
{
if (NumLodLevels != 0 && NumLodLevels != clusterLevels.Count)
{
throw new Exception("Uneven cluster levels number: " + ingredient.path);
}
}
AddIngredientToHierarchy(ingredient.path);
ProteinIngredientNames.Add(ingredient.path);
CPUBuffers.Get.ProteinToggleFlags.Add(1);
CPUBuffers.Get.ProteinIngredientsRadii.Add(AtomHelper.ComputeRadius(atoms));
CPUBuffers.Get.ProteinAtomCount.Add(atoms.Count);
CPUBuffers.Get.ProteinAtomStart.Add(CPUBuffers.Get.ProteinAtoms.Count);
for (var i = 0; i < atoms.Count; i++)
{
var helix = atoms[i].helixIndex >= 0;
var sheet = atoms[i].sheetIndex >= 0;
//if (helix && sheet) throw new Exception("Da fuk just happened");
var secondaryStructure = 0;
secondaryStructure = (helix) ? atoms[i].helixIndex : secondaryStructure;
secondaryStructure = (sheet) ? -atoms[i].sheetIndex : secondaryStructure;
//if (sheet)
//{
// int a = 0;
//}
CPUBuffers.Get.ProteinAtoms.Add(new Vector4(atoms[i].position.x, atoms[i].position.y, atoms[i].position.z, atoms[i].radius));
CPUBuffers.Get.ProteinAtomInfo.Add(new Vector4(secondaryStructure, atoms[i].symbolId, atoms[i].residueId, atoms[i].chainId));
CPUBuffers.Get.ProteinAtomInfo2.Add(new Vector4(atoms[i].helixIndex, atoms[i].nbHelicesPerChain, atoms[i].sheetIndex, atoms[i].nbSheetsPerChain));
}
if (clusterLevels != null)
{
NumLodLevels = clusterLevels.Count;
foreach (var level in clusterLevels)
{
CPUBuffers.Get.ProteinAtomClusterCount.Add(level.Count);
CPUBuffers.Get.ProteinAtomClusterStart.Add(CPUBuffers.Get.ProteinAtomClusters.Count);
CPUBuffers.Get.ProteinAtomClusters.AddRange(level);
}
}
}
public void AddProteinIngredient(string path, Bounds bounds, List <Vector4> atomSpheres, Color color,
List <float> clusterLevels = null,
bool nolod = false)
{
if (SceneHierarchy.Contains(path))
{
throw new Exception("Invalid protein path: " + path);
}
if (ProteinIngredientNames.Contains(path))
{
throw new Exception("Invalid protein path: " + path);
}
if (clusterLevels != null)
{
if (NumLodLevels != 0 && NumLodLevels != clusterLevels.Count)
{
throw new Exception("Uneven cluster levels number: " + path);
}
}
if (color == null)
{
color = MyUtility.GetRandomColor();
}
AddIngredientToHierarchy(path);
ProteinColors.Add(color);
ProteinToggleFlags.Add(1);
ProteinIngredientNames.Add(path);
ProteinRadii.Add(AtomHelper.ComputeRadius(atomSpheres));
ProteinAtomCount.Add(atomSpheres.Count);
ProteinAtomStart.Add(ProteinAtoms.Count);
ProteinAtoms.AddRange(atomSpheres);
if (clusterLevels != null)
{
NumLodLevels = clusterLevels.Count;
foreach (var level in clusterLevels)
{
var numClusters = Math.Max(atomSpheres.Count * level, 5);
List <Vector4> clusterSpheres;
if (!nolod)
{
clusterSpheres = KMeansClustering.GetClusters(atomSpheres, (int)numClusters);
}
else
{
clusterSpheres = new List <Vector4>(atomSpheres);
}
ProteinAtomClusterCount.Add(clusterSpheres.Count);
ProteinAtomClusterStart.Add(ProteinAtomClusters.Count);
ProteinAtomClusters.AddRange(clusterSpheres);
}
}
}