public ObjectResult SaveGeneAnnotation(int geneId, [FromBody] AnnotationDto annotationDto)
{
if (!IsModelValid(annotationDto))
{
return(_invalidModelStateMessage);
}
if (annotationDto.AppUserId.Equals(0))
{
annotationDto.AppUserId = annotationDto.AppUser.Id;
}
annotationDto.AppUser = null;
var annotationEntity = _mapper.Map <Annotation>(annotationDto);
_context.Annotation.Add(annotationEntity);
_context.SaveChanges();
var annotationGeneEntity = new AnnotationGene {
GeneId = geneId, AnnotationId = annotationEntity.Id
};
_context.AnnotationGene.Add(annotationGeneEntity);
_context.SaveChanges();
annotationEntity = _context.Annotation
.Include(annotation => annotation.AppUser)
.Single(annotation => annotation.Id == annotationEntity.Id);
return(Ok(_mapper.Map <AnnotationDto>(annotationEntity)));
}
public ObjectResult SaveLiteratureAnnotation(int literatureId, [FromBody] AnnotationDto annotationDto)
{
if (!IsModelValid(annotationDto))
{
return(BadRequest(_invalidModelStateMessage));
}
var annotationEntity = _mapper.Map <Annotation>(annotationDto);
_context.Annotation.Add(annotationEntity);
_context.SaveChanges();
var annotationLiterature = new AnnotationLiterature
{
AnnotationId = annotationEntity.Id,
LiteratureId = literatureId
};
_context.AnnotationLiterature.Add(annotationLiterature);
_context.SaveChanges();
annotationEntity = _context.Annotation
.Include(a => a.AppUser)
.Single(a => a.Id == annotationEntity.Id);
return(Ok(_mapper.Map <AnnotationDto>(annotationEntity)));
}
private bool IsModelValid(AnnotationDto annotationDto)
{
if (!ModelState.IsValid)
{
_invalidModelStateMessage = BadRequest(ModelState);
return(false);
}
if (annotationDto.AppUserId.Equals(0))
{
if (annotationDto.AppUser == null || annotationDto.AppUser.Id.Equals(0))
{
_invalidModelStateMessage = BadRequest("AppUserId required");
return(false);
}
annotationDto.AppUserId = annotationDto.AppUser.Id;
}
if (annotationDto.Id > 0)
{
_invalidModelStateMessage = BadRequest("Only NEW annotation are valid");
return(false);
}
return(true);
}
public ObjectResult AddAnnotationGeneVariantLiterature(
int geneVariantLiteratureId,
[FromBody] AnnotationDto annotationDto
)
{
try
{
var geneVariantLiterature = _context.GeneVariantLiterature
.Find(geneVariantLiteratureId);
var annotationEntity = _mapper.Map <Annotation>(annotationDto);
_context.Annotation.Add(annotationEntity);
_context.SaveChanges();
var annotationGeneVariantLiterature = new AnnotationGeneVariantLiterature
{
GeneVariantLiteratureId = geneVariantLiterature.Id,
AnnotationId = annotationEntity.Id
};
_context.AnnotationGeneVariantLiterature.Add(annotationGeneVariantLiterature);
_context.SaveChanges();
annotationEntity = _context.Annotation
.Include(annotation => annotation.AppUser)
.Single(annotation => annotation.Id == annotationEntity.Id);
return(Ok(_mapper.Map <AnnotationDto>(annotationEntity)));
}
catch (InvalidOperationException e)
{
return(NotFound("could not find GeneVariantLiterature" + e));
}
}
