private CohortIdentificationConfiguration CreateCohortIdentificationConfiguration(ExtractionFilter inclusionFilter1)
{
//Create the top level configuration object
var cic = new CohortIdentificationConfiguration(_repos.CatalogueRepository, "Tayside Lung Cancer Cohort");
//create a UNION container for Inclusion Criteria
var container = new CohortAggregateContainer(_repos.CatalogueRepository, SetOperation.UNION);
container.Name = "Inclusion Criteria";
container.SaveToDatabase();
cic.RootCohortAggregateContainer_ID = container.ID;
cic.SaveToDatabase();
//Create a new cohort set to the 'Inclusion Criteria' based on the filters Catalogue
var cata = inclusionFilter1.ExtractionInformation.CatalogueItem.Catalogue;
var ac = cic.CreateNewEmptyConfigurationForCatalogue(cata, (a, b) => { throw new Exception("Problem encountered with chi column(s)"); }, false);
container.AddChild(ac, 0);
//Add the filter to the WHERE logic of the cohort set
var whereContainer = new AggregateFilterContainer(_repos.CatalogueRepository, FilterContainerOperation.OR);
ac.Name = "People with " + inclusionFilter1.Name;
ac.RootFilterContainer_ID = whereContainer.ID;
cic.EnsureNamingConvention(ac); //this will put cicx at the front and cause implicit SaveToDatabase
FilterImporter filterImporter = new FilterImporter(new AggregateFilterFactory(_repos.CatalogueRepository), null);
var cloneFilter = filterImporter.ImportFilter(inclusionFilter1, null);
whereContainer.AddChild(cloneFilter);
return(cic);
}
private void ImportMandatoryFilters(Catalogue catalogue, AggregateConfiguration configuration, ISqlParameter[] globalParameters)
{
var filterImporter = new FilterImporter(new AggregateFilterFactory((ICatalogueRepository)catalogue.Repository), globalParameters);
//Find any Mandatory Filters
var mandatoryFilters = catalogue.GetAllMandatoryFilters();
List <AggregateFilter> createdSoFar = new List <AggregateFilter>();
if (mandatoryFilters.Any())
{
var container = new AggregateFilterContainer((ICatalogueRepository)Repository, FilterContainerOperation.AND);
configuration.RootFilterContainer_ID = container.ID;
configuration.SaveToDatabase();
foreach (ExtractionFilter filter in mandatoryFilters)
{
var newFilter = (AggregateFilter)filterImporter.ImportFilter(filter, createdSoFar.ToArray());
container.AddChild(newFilter);
createdSoFar.Add(newFilter);
}
}
}
