public void SetData(WorkspaceData data, WorkspaceData savedData)
{
if (Equals(Data, data) && Equals(SavedData, savedData))
{
return;
}
var workspaceChange = new WorkspaceChangeArgs(Data, SavedData);
_data = data;
_savedWorkspaceData = savedData;
_tracerDefList = null;
RetentionTimeAlignments.SetData(Data);
Settings.Update(workspaceChange);
Modifications.Update(workspaceChange);
TracerDefs.Update(workspaceChange);
Peptides.Update(workspaceChange);
MsDataFiles.Update(workspaceChange);
PeptideAnalyses.Update(workspaceChange);
var changeHandlers = Change;
if (null != changeHandlers)
{
changeHandlers(this, workspaceChange);
}
}
public void Save(LongOperationBroker longOperationBroker)
{
longOperationBroker.UpdateStatusMessage("Synchronizing with database changes");
int reconcileAttempt = 1;
while (true)
{
var dirtyPeptideAnalyses = PeptideAnalyses.ListDirty()
.ToDictionary(pa => pa.Id, pa => pa.ChromatogramsWereLoaded);
if (DatabasePoller.TryLoadAndMergeChanges(dirtyPeptideAnalyses))
{
break;
}
reconcileAttempt++;
longOperationBroker.UpdateStatusMessage("Synchronizing with database changes attempt #" + reconcileAttempt);
}
using (var session = OpenWriteSession())
{
session.BeginTransaction();
UpdateWorkspaceVersion(longOperationBroker, session, SavedWorkspaceChange);
bool workspaceChanged = false;
var dbWorkspace = LoadDbWorkspace(session);
longOperationBroker.UpdateStatusMessage("Saving tracer definitions");
workspaceChanged = TracerDefs.Save(session, dbWorkspace) || workspaceChanged;
longOperationBroker.UpdateStatusMessage("Saving modifications");
workspaceChanged = Modifications.Save(session, dbWorkspace) || workspaceChanged;
longOperationBroker.UpdateStatusMessage("Saving settings");
workspaceChanged = Settings.Save(session, dbWorkspace) || workspaceChanged;
longOperationBroker.UpdateStatusMessage("Saving data files");
foreach (var msDataFile in MsDataFiles.ListDirty())
{
msDataFile.Save(session);
}
longOperationBroker.UpdateStatusMessage("Saving peptides");
foreach (var peptide in Peptides.ListDirty())
{
peptide.Save(session);
}
longOperationBroker.UpdateStatusMessage("Saving peptide analyses");
foreach (var peptideAnalysis in PeptideAnalyses.ListDirty())
{
if (longOperationBroker.WasCancelled)
{
return;
}
peptideAnalysis.Save(session);
}
if (workspaceChanged)
{
session.Save(new DbChangeLog(this));
}
longOperationBroker.SetIsCancelleable(false);
session.Transaction.Commit();
}
}
private Workspace()
{
_data = _savedWorkspaceData = new WorkspaceData();
Modifications = new Modifications(this);
Settings = new WorkspaceSettings(this);
TracerDefs = new TracerDefs(this);
PeptideAnalyses = new PeptideAnalyses(this);
Peptides = new Peptides(this);
MsDataFiles = new MsDataFiles(this);
RetentionTimeAlignments = new RetentionTimeAlignments(Data);
}
public void Merge(WorkspaceData newData)
{
var newSavedData = newData;
newData = Settings.Merge(newData);
newData = Modifications.Merge(newData);
newData = TracerDefs.Merge(newData);
newData = Peptides.Merge(newData);
newData = MsDataFiles.Merge(newData);
newData = PeptideAnalyses.Merge(newData);
SetData(newData, newSavedData);
}
public IList <PeptideAnalysis> ListOpenPeptideAnalyses()
{
return(PeptideAnalyses.Where(peptideAnalysis => peptideAnalysis.GetChromatogramRefCount() > 0).ToArray());
}
public bool HasAnyChromatograms()
{
return(PeptideAnalyses.Any(
peptideAnalysis => peptideAnalysis.FileAnalyses.Any(
fileAnalysis => fileAnalysis.ChromatogramSetId.HasValue)));
}