//[TestMethod]
public void TestDdaSmall()
{
ChorusAccount TEST_ACCOUNT = new ChorusAccount("https://chorusproject.org", "*****@*****.**", "pwd");
var stream = typeof (ChromTaskListTest).Assembly.GetManifestResourceStream(typeof (ChromTaskListTest),
"DdaSmall.ChorusRequest.xml");
Assert.IsNotNull(stream);
var chromatogramRequest = (ChromatogramRequestDocument) new XmlSerializer(typeof (ChromatogramRequestDocument)).Deserialize(stream);
var chromTaskList = new ChromTaskList(() => { }, new SrmDocument(SrmSettingsList.GetDefault()), TEST_ACCOUNT,
TEST_ACCOUNT.GetChorusUrl().SetFileId(28836), ChromTaskList.ChunkChromatogramRequest(chromatogramRequest, 100));
chromTaskList.SetMinimumSimultaneousTasks(10);
var failedTasks = new HashSet<ChromatogramGeneratorTask>();
foreach (var chromKey in chromTaskList.ChromKeys)
{
float[] times;
float[] intensities;
float[] massErrors;
int[] scanIds;
chromTaskList.GetChromatogram(chromKey, out times, out scanIds, out intensities, out massErrors);
if (null == times)
{
var task = chromTaskList.GetGeneratorTask(chromKey);
if (failedTasks.Add(task))
{
var memoryStream = new MemoryStream();
var xmlWriter = XmlWriter.Create(memoryStream, new XmlWriterSettings {Encoding = Encoding.UTF8});
new XmlSerializer(typeof(ChromatogramRequestDocument)).Serialize(xmlWriter, task.ChromatogramRequestDocument);
Console.Out.WriteLine("Failed to get data for {0}", Encoding.UTF8.GetString(memoryStream.ToArray()));
}
}
}
Assert.AreEqual(0, failedTasks.Count);
}
public void TestThermoDIA()
{
if (!RunPerfTests)
return; // PerfTests only run when the global "allow perf tests" flag is set
var xmlSerializer = new XmlSerializer(typeof (ChromatogramRequestDocument));
var stream = typeof (PerfChorusGenerateChromatograms).Assembly.GetManifestResourceStream(
typeof (PerfChorusGenerateChromatograms), "ThermoDIA.ChorusRequest.xml");
Assert.IsNotNull(stream);
var chromatogramRequestDocument = (ChromatogramRequestDocument) xmlSerializer.Deserialize(stream);
var chorusUrl = TEST_ACCOUNT.GetChorusUrl().SetFileId(28836);
var srmDocument = new SrmDocument(SrmSettingsList.GetDefault());
DateTime startTime = DateTime.Now;
ChromTaskList chromTaskList = new ChromTaskList(()=>{}, srmDocument, TEST_ACCOUNT, chorusUrl, new[]{chromatogramRequestDocument});
chromTaskList.SetMinimumSimultaneousTasks(2);
while (chromTaskList.PercentComplete < 100)
{
Thread.Sleep(100);
}
DateTime endTime = DateTime.Now;
Assert.AreEqual(0, chromTaskList.ListExceptions().Count);
Console.Out.WriteLine("Elapsed time {0}", endTime.Subtract(startTime));
}
