public Schema(ISessionFactory sessionFactory, DataSettings dataSettings)
{
_sessionFactory = sessionFactory;
_annotationDefNames = new HashSet<string>();
if (dataSettings != null)
{
foreach (var annotationDef in dataSettings.AnnotationDefs)
{
_annotationDefNames.Add(AnnotationDef.GetKey(annotationDef.Name));
}
}
}
public bool Equals(DataSettings other)
{
if (ReferenceEquals(null, other))
{
return(false);
}
if (ReferenceEquals(this, other))
{
return(true);
}
return(ArrayUtil.EqualsDeep(other._annotationDefs, _annotationDefs) &&
ArrayUtil.EqualsDeep(other._groupComparisonDefs, _groupComparisonDefs) &&
Equals(ViewSpecList, other.ViewSpecList) &&
Equals(PanoramaPublishUri, other.PanoramaPublishUri) &&
Equals(DocumentGuid, other.DocumentGuid));
}
public SrmSettings ChangeDataSettings(DataSettings prop)
{
return ChangeProp(ImClone(this), im => im.DataSettings = prop);
}
public SrmSettings(string name, PeptideSettings peptideSettings, TransitionSettings transitionSettings, DataSettings dataSettings, DocumentRetentionTimes documentRetentionTimes)
: base(name)
{
PeptideSettings = peptideSettings;
TransitionSettings = transitionSettings;
DataSettings = dataSettings;
DocumentRetentionTimes = documentRetentionTimes;
// Create cached calculator instances
CreatePrecursorMassCalcs();
CreateFragmentMassCalcs();
}
public bool Equals(DataSettings other)
{
if (ReferenceEquals(null, other)) return false;
if (ReferenceEquals(this, other)) return true;
return ArrayUtil.EqualsDeep(other._annotationDefs, _annotationDefs)
&& ArrayUtil.EqualsDeep(other._groupComparisonDefs, _groupComparisonDefs)
&& Equals(ViewSpecList, other.ViewSpecList)
&& Equals(PanoramaPublishUri, other.PanoramaPublishUri)
&& Equals(DocumentGuid, other.DocumentGuid);
}
public DataSettings GetDataSettings(DataSettings dataSettings)
{
var selectedViews = new HashSet<string>(chooseViewsControl.CheckedViews
.Where(viewName=>viewName.GroupId.Equals(PersistedViews.MainGroup.Id))
.Select(viewName=>viewName.Name));
var viewSpecs = Settings.Default.PersistedViews.GetViewSpecList(PersistedViews.MainGroup.Id)
.ViewSpecs.Where(view => selectedViews.Contains(view.Name));
return dataSettings.ChangeAnnotationDefs(_annotationsListBoxDriver.Chosen)
.ChangeGroupComparisonDefs(_groupComparisonsListBoxDriver.Chosen)
.ChangeViewSpecList(new ViewSpecList(viewSpecs));
}