public void BreastToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
string referenceRange = "Based on 2013 CAP/ASCO guidelines, a case is considered POSITIVE when the HER2 to Chr17 ratio is >=2.0 with any average " +
"HER2 copy number or when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=6.0 signals/nucleus, " +
"EQUIVOCAL when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=4.0 and <6.0 signals/cell, and " +
"NEGATIVE when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number < 4.0 signals/cell.";
this.AddHeader(document, panelSetOrder, "HER2 Gene Amplification");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("HER2: " + panelSetOrder.Result, document, "F");
this.AddNextObxElement("Ratio: " + panelSetOrder.AverageHer2Chr17Signal, document, "F");
this.AddNextObxElement("Average HER2 Copy Number = " + panelSetOrder.AverageHer2NeuSignal.Value.ToString(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
if (string.IsNullOrEmpty(panelSetOrder.ResultComment) != true)
{
this.HandleLongString("Comment: " + panelSetOrder.ResultComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document, "F");
this.AddNextObxElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document, "F");
if (panelSetOrder.AverageHer2NeuSignal.HasValue == true)
{
this.AddNextObxElement("HER2 average copy number: " + panelSetOrder.AverageHer2NeuSignal.Value.ToString(), document, "F");
}
this.AddNextObxElement("Chr17 average copy number: " + panelSetOrder.AverageChr17Signal, document, "F");
this.AddNextObxElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.AverageHer2Chr17Signal, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder) this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string blockDescription = string.Empty;
if (aliquotOrder != null)
{
blockDescription = " - Block " + aliquotOrder.Label;
}
this.AddNextObxElement("Specimen site and type: " + specimenOrder.Description + blockDescription, document, "F");
this.AddNextObxElement("Specimen fixation type: " + specimenOrder.LabFixation, document, "F");
this.AddNextObxElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document, "F");
this.AddNextObxElement("Duration of fixation: " + specimenOrder.FixationDurationString, document, "F");
this.AddNextObxElement("Sample adequacy: " + panelSetOrder.SampleAdequacy, document, "F");
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextObxElement("Collection Date/Time: " + collectionDateTimeString, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(panelSetOrder.InterpretiveComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Reference Range: " + referenceRange, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
if (string.IsNullOrEmpty(specimenOrder.FixationComment) == false)
{
this.HandleLongString("Fixation Comment:" + specimenOrder.FixationComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(panelSetOrder.Method, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(panelSetOrder.ReportReference, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.HandleLongString(panelSetOrder.ASRComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public void BreastToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
string referenceRange = "Based on 2013 CAP/ASCO guidelines, a case is considered POSITIVE when the HER2 to Chr17 ratio is >=2.0 with any average " +
"HER2 copy number or when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=6.0 signals/nucleus, " +
"EQUIVOCAL when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=4.0 and <6.0 signals/cell, and " +
"NEGATIVE when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number < 4.0 signals/cell.";
this.AddHeader(document, panelSetOrder, "HER2 Gene Amplification");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("HER2: " + panelSetOrder.Result, document, "F");
this.AddNextObxElement("Ratio: " + panelSetOrder.Her2Chr17Ratio, document, "F");
this.AddNextObxElement("Average HER2 Copy Number = " + panelSetOrder.AverageHer2NeuSignal, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Reference Range: " + referenceRange, document, "F");
if (string.IsNullOrEmpty(panelSetOrder.ResultComment) != true)
{
this.HandleLongString("Comment: " + panelSetOrder.ResultComment, document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document, "F");
this.AddNextObxElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document, "F");
this.AddNextObxElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHer2NeuSignal, document, "F");
this.AddNextObxElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageChr17Signal, document, "F");
this.AddNextObxElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.Her2Chr17Ratio, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder)this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string specimenDescriptionString = specimenOrder.Description + " - " + aliquotOrder.Label;
this.AddNextObxElement("Specimen Description: " + specimenDescriptionString, document, "F");
this.AddNextObxElement("Fixation Type: " + specimenOrder.LabFixation, document, "F");
this.AddNextObxElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document, "F");
this.AddNextObxElement("Fixation Duration: " + specimenOrder.FixationDurationString, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(panelSetOrder.InterpretiveComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(panelSetOrder.Method, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(panelSetOrder.ReportReference, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
foreach (YellowstonePathology.Business.Amendment.Model.Amendment amendment in panelSetOrder.AmendmentCollection)
{
this.AddNextObxElement(amendment.AmendmentType + ": " + amendment.AmendmentDate.Value.ToString("MM/dd/yyyy"), document, "C");
this.HandleLongString(amendment.Text, document, "C");
if (amendment.RequirePathologistSignature == true)
{
this.AddNextObxElement("Signature: " + amendment.PathologistSignature, document, "C");
}
this.AddNextObxElement("", document, "C");
}
this.HandleLongString(panelSetOrder.ASRComment, document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
private void BreastToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
string referenceRange = "Based on 2013 CAP/ASCO guidelines, a case is considered POSITIVE when the HER2 to Chr17 ratio is >=2.0 with any average " +
"HER2 copy number or when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=6.0 signals/nucleus, " +
"EQUIVOCAL when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number >=4.0 and <6.0 signals/cell, and " +
"NEGATIVE when the HER2 to Chr17 ratio is <2.0 with an average HER2 copy number < 4.0 signals/cell.";
this.AddNextNteElement("HER2: " + panelSetOrder.Result, document);
this.AddNextNteElement("Ratio: " + panelSetOrder.AverageHer2Chr17Signal, document);
this.AddNextNteElement("Average HER2 Copy Number = " + panelSetOrder.AverageHer2NeuSignal.Value.ToString(), document);
this.AddBlankNteElement(document);
if (panelSetOrder.ResultComment != string.Empty)
{
this.AddNextNteElement("Comment: " + panelSetOrder.ResultComment, document);
this.AddBlankNteElement(document);
}
this.AddNextNteElement("Pathologist: " + panelSetOrder.Signature, document);
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextNteElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document);
}
this.AddBlankNteElement(document);
this.AddAmendments(document, panelSetOrder, this.m_AccessionOrder);
this.AddNextNteElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document);
this.AddNextNteElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document);
if (panelSetOrder.AverageHer2NeuSignal.HasValue == true)
{
this.AddNextNteElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHer2NeuSignal, document);
}
this.AddNextNteElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageChr17Signal, document);
this.AddNextNteElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.AverageHer2Chr17Signal, document);
this.AddBlankNteElement(document);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder) this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string blockDescription = string.Empty;
if (aliquotOrder != null)
{
blockDescription = " - Block " + aliquotOrder.Label;
}
this.AddNextNteElement("Specimen site and type: " + specimenOrder.Description + blockDescription, document);
this.AddNextNteElement("Specimen fixation type: " + specimenOrder.LabFixation, document);
this.AddNextNteElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document);
this.AddNextNteElement("Duration of fixation: " + specimenOrder.FixationDurationString, document);
this.AddNextNteElement("Sample adequacy: " + panelSetOrder.SampleAdequacy, document);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextNteElement("Collection Date/Time: " + collectionDateTimeString, document);
this.AddBlankNteElement(document);
this.AddNextNteElement("Interpretation: ", document);
this.HandleLongString(panelSetOrder.InterpretiveComment, document);
this.AddBlankNteElement(document);
this.AddNextNteElement("Reference Range: " + referenceRange, document);
this.AddBlankNteElement(document);
if (string.IsNullOrEmpty(specimenOrder.FixationComment) == false)
{
this.HandleLongString("Fixation Comment:" + specimenOrder.FixationComment, document);
this.AddBlankNteElement(document);
}
this.AddNextNteElement("Method: ", document);
string method = panelSetOrder.Method;
if (string.IsNullOrEmpty(method) == true)
{
method = System.Security.SecurityElement.Escape("This test was performed using a molecular method, In Situ Hybridization (ISH) with the US FDA approved Inform HER2 DNA probe kit, modified to report results according to ASCO/CAP guidelines. The test was performed on paraffin embedded tissue in compliance with ASCO/CAP guidelines. Probes used include a locus specific probe for HER2 and an internal hybridization control probe for the centromeric region of chromosome 17 (Chr17).");
}
this.AddNextNteElement(method, document);
this.AddBlankNteElement(document);
this.AddNextNteElement("References: ", document);
this.AddNextNteElement(panelSetOrder.ReportReference, document);
this.AddBlankNteElement(document);
this.AddNextNteElement(panelSetOrder.ASRComment, document);
this.AddBlankNteElement(document);
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextNteElement(locationPerformed, document);
this.AddBlankNteElement(document);
}
private void ASCOPre2014ToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
this.AddNextNteElement("HER2: " + panelSetOrder.Result, document);
this.AddNextNteElement("Ratio: " + panelSetOrder.AverageHer2Chr17Signal, document);
this.AddNextNteElement("Reference Range: Negative < 2, Positive >= 2", document);
if (panelSetOrder.ResultComment != string.Empty)
{
this.AddNextNteElement("Comment: " + panelSetOrder.ResultComment, document);
this.AddBlankNteElement(document);
}
this.AddNextNteElement("Pathologist: " + panelSetOrder.Signature, document);
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextNteElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document);
}
this.AddBlankNteElement(document);
this.AddAmendments(document, panelSetOrder);
this.AddNextNteElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document);
this.AddNextNteElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document);
this.AddNextNteElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHer2NeuSignal.Value.ToString(), document);
this.AddNextNteElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageChr17Signal, document);
this.AddNextNteElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.Her2Chr17Ratio, document);
this.AddBlankNteElement(document);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder)this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string blockDescription = string.Empty;
if (aliquotOrder != null)
{
blockDescription = " - Block " + aliquotOrder.Label;
}
this.AddNextNteElement("Specimen site and type: " + specimenOrder.Description + blockDescription, document);
this.AddNextNteElement("Specimen fixation type: " + specimenOrder.LabFixation, document);
this.AddNextNteElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document);
this.AddNextNteElement("Duration of fixation: " + specimenOrder.FixationDurationString, document);
this.AddNextNteElement("Sample adequacy: " + panelSetOrder.SampleAdequacy, document);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextNteElement("Collection Date/Time: " + collectionDateTimeString, document);
this.AddBlankNteElement(document);
this.AddNextNteElement("Interpretation: ", document);
this.HandleLongString(panelSetOrder.InterpretiveComment, document);
this.AddBlankNteElement(document);
if (string.IsNullOrEmpty(specimenOrder.FixationComment) == false)
{
this.HandleLongString("Fixation Comment:" + specimenOrder.FixationComment, document);
this.AddBlankNteElement(document);
}
this.AddNextNteElement("Method: ", document);
string method = panelSetOrder.Method;
if (string.IsNullOrEmpty(method) == true)
{
method = System.Security.SecurityElement.Escape("This test was performed using a molecular method, In Situ Hybridization (ISH) with the US FDA approved Inform HER2 DNA probe kit, modified to report results according to ASCO/CAP guidelines. The test was performed on paraffin embedded tissue in compliance with ASCO/CAP guidelines. Probes used include a locus specific probe for HER2 and an internal hybridization control probe for the centromeric region of chromosome 17 (Chr17).");
}
this.AddNextNteElement(method, document);
this.AddBlankNteElement(document);
this.AddNextNteElement("References: ", document);
this.AddNextNteElement(panelSetOrder.ReportReference, document);
this.AddBlankNteElement(document);
this.AddNextNteElement(panelSetOrder.ASRComment, document);
this.AddBlankNteElement(document);
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextNteElement(locationPerformed, document);
this.AddBlankNteElement(document);
}
public void ASCOPre2014ToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
this.AddHeader(document, panelSetOrder, "HER2 Gene Amplification");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("HER2: " + panelSetOrder.Result, document, "F");
this.AddNextObxElement("Ratio: " + panelSetOrder.AverageHer2Chr17Signal, document, "F");
this.AddNextObxElement("Reference Range: Negative < 2, Positive >= 2", document, "F");
if (string.IsNullOrEmpty(panelSetOrder.ResultComment) != true)
{
this.HandleLongString("Comment: " + panelSetOrder.ResultComment, document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document, "F");
this.AddNextObxElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document, "F");
if (panelSetOrder.AverageHer2NeuSignal.HasValue == true)
{
this.AddNextObxElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHer2NeuSignal.Value.ToString(), document, "F");
}
this.AddNextObxElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageChr17Signal, document, "F");
this.AddNextObxElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.AverageHer2Chr17Signal, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder)this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string blockDescription = string.Empty;
if (aliquotOrder != null)
{
blockDescription = " - Block " + aliquotOrder.Label;
}
this.AddNextObxElement("Specimen site and type: " + specimenOrder.Description + blockDescription, document, "F");
this.AddNextObxElement("Specimen fixation type: " + specimenOrder.LabFixation, document, "F");
this.AddNextObxElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document, "F");
this.AddNextObxElement("Duration of fixation: " + specimenOrder.FixationDurationString, document, "F");
this.AddNextObxElement("Sample adequacy: " + panelSetOrder.SampleAdequacy, document, "F");
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextObxElement("Collection Date/Time: " + collectionDateTimeString, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(panelSetOrder.InterpretiveComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
if (string.IsNullOrEmpty(specimenOrder.FixationComment) == false)
{
this.HandleLongString("Fixation Comment:" + specimenOrder.FixationComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(panelSetOrder.Method, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(panelSetOrder.ReportReference, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement(panelSetOrder.ASRComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public void GastricToXml(XElement document, HER2AmplificationByISHTestOrder panelSetOrder)
{
this.AddHeader(document, panelSetOrder, "HER2 Gene Amplification");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("HER2: " + panelSetOrder.Result, document, "F");
this.AddNextObxElement("Ratio: " + panelSetOrder.Her2Chr17Ratio, document, "F");
this.AddNextObxElement("Reference Range: Negative < 2, Positive >= 2", document, "F");
if (string.IsNullOrEmpty(panelSetOrder.ResultComment) != true)
{
this.HandleLongString("Comment: " + panelSetOrder.ResultComment, document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Number of invasive tumor cells counted: " + panelSetOrder.CellsCounted.ToString(), document, "F");
this.AddNextObxElement("Number of observers: " + panelSetOrder.NumberOfObservers.ToString(), document, "F");
this.AddNextObxElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHer2NeuSignal, document, "F");
this.AddNextObxElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageChr17Signal, document, "F");
this.AddNextObxElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.Her2Chr17Ratio, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder) this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string specimenDescriptionString = specimenOrder.Description + " - " + aliquotOrder.Label;
this.AddNextObxElement("Specimen Description: " + specimenDescriptionString, document, "F");
this.AddNextObxElement("Fixation Type: " + specimenOrder.LabFixation, document, "F");
this.AddNextObxElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document, "F");
this.AddNextObxElement("Fixation Duration: " + specimenOrder.FixationDurationString, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(panelSetOrder.InterpretiveComment, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(panelSetOrder.Method, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(panelSetOrder.ReportReference, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
foreach (YellowstonePathology.Business.Amendment.Model.Amendment amendment in panelSetOrder.AmendmentCollection)
{
this.AddNextObxElement(amendment.AmendmentType + ": " + amendment.AmendmentDate.Value.ToString("MM/dd/yyyy"), document, "C");
this.HandleLongString(amendment.Text, document, "C");
if (amendment.RequirePathologistSignature == true)
{
this.AddNextObxElement("Signature: " + amendment.PathologistSignature, document, "C");
}
this.AddNextObxElement("", document, "C");
}
this.AddNextObxElement(panelSetOrder.ASRComment, document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
