public static MessageInitializerDiscrete GetInstance(
Converter <Leaf, SufficientStatistics> predictorClassFunction,
Converter <Leaf, SufficientStatistics> targetClassFunction,
DistributionDiscrete discreteDistribution,
OptimizationParameterList initParams,
IEnumerable <Leaf> fullLeafCollection)
{
return(new MessageInitializerDiscrete(SpecialFunctions.CreateSingletonList(predictorClassFunction), targetClassFunction, discreteDistribution, null, initParams, fullLeafCollection));
}
public static MessageInitializerDiscrete GetInstance(
Converter <Leaf, SufficientStatistics> singleVariableClassFunction,
DistributionDiscrete discreteDistribution,
OptimizationParameterList initParams,
IEnumerable <Leaf> fullLeafCollection)
{
List <Converter <Leaf, SufficientStatistics> > emptyList = new List <Converter <Leaf, SufficientStatistics> >();
return(new MessageInitializerDiscrete(emptyList, singleVariableClassFunction, discreteDistribution, null, initParams, fullLeafCollection));
}
protected MessageInitializerDiscrete(
List <Converter <Leaf, SufficientStatistics> > predictorClassFunctionList,
Converter <Leaf, SufficientStatistics> targetClassFunction,
DistributionDiscrete discreteDistribution,
int[] fisherCounts,
OptimizationParameterList initParams,
IEnumerable <Leaf> fullLeafCollection)
: base(predictorClassFunctionList, targetClassFunction, discreteDistribution, fullLeafCollection)
{
_fisherCounts = fisherCounts;
_initializationParams = initParams;
}
public static ModelTesterDiscreteConditional GetInstance(DistributionDiscrete distribution)
{
return(new ModelTesterDiscreteConditional(distribution));
}
protected ModelTesterDiscreteConditional(DistributionDiscrete nullModel)
:
base(nullModel, nullModel)
{
}
public NullDataGeneratorTargetParametric(ModelScorer modelScorer, DistributionDiscrete distribution)
:
base(modelScorer, distribution)
{
}
public NullDataGeneratorParametric(ModelScorer modelScorer, DistributionDiscrete discreteDistn)
{
_modelScorer = modelScorer;
_discreteDistribution = discreteDistn;
}
public string ToString(DistributionDiscrete distributionDiscrete)
{
return(SpecialFunctions.CreateTabString(distributionDiscrete.GetParameterValueString(OptimizationParameters), Loglikelihood));
}
protected ModelEvaluatorDiscrete(List <IDistributionSingleVariable> nullDistns, DistributionDiscrete altDistn, ModelScorer scorer)
: base(nullDistns, altDistn, scorer)
{
}
public static ModelTesterDiscreteJoint GetInstance(DistributionDiscrete nullDistn, DistributionDiscrete altDistn)
{
return(new ModelTesterDiscreteJoint(nullDistn, altDistn));
}
protected ModelTesterDiscreteJoint(DistributionDiscrete nullModel, DistributionDiscrete altModel)
:
base(nullModel, altModel)
{
_chiSquareDegreesOfFreedom = altModel.GetParameters(true).CountFreeParameters() - 2 * nullModel.GetParameters(false).CountFreeParameters();
}
//protected override NullDataCollection CreateNullDataGenerator(
// ModelScorer modelScorer,
// PhyloTree phyloTree,
// RangeCollection nullIndexRangeCollection,
// IEnumerable<Pair<string, Dictionary<string, SufficientStatistics>>> predictorNameAndCaseIdToNonMissingValueEnumeration,
// IEnumerable<Pair<string, Dictionary<string, SufficientStatistics>>> targetNameAndCaseIdToNonMissingValueEnumeration)
//{
// //NullDataGenerator nullDataGenerator = new NullDataGeneratorTargetAlongTree(modelScorer, phyloTree, this);
// //NullDataGenerator nullDataGenerator = new NullDataGeneratorPredictorAlongTree(modelScorer, phyloTree, this);
// //NullDataGenerator nullDataGenerator = new NullDataGeneratorPredictorPermutation();
// NullDataGenerator nullDataGenerator = new NullDataGeneratorTargetPermutation();
// return NullDataCollection.GetInstance(
// nullDataGenerator,
// nullIndexRangeCollection,
// predictorNameAndCaseIdToNonMissingValueEnumeration,
// targetNameAndCaseIdToNonMissingValueEnumeration);
//}
protected ModelTesterDiscrete(DistributionDiscrete nullModel, DistributionDiscrete altModel) :
base(nullModel, altModel)
{
}
