/// <summary>
/// Divide by another float stack pixel-wise
/// </summary>
/// <param name="ims">The stack to divide by</param>
public void Divide(ImageStack32F ims)
{
DisposeGuard();
if (ims.IsDisposed)
{
throw new ArgumentException("Can't divide by disposed image");
}
if (!IsCompatible(ims))
{
throw new ArgumentException("Given image has wrong dimensions or z versus t ordering");
}
if (Stride == ims.Stride)
{
for (long i = 0; i < ImageNB / 4; i++)
{
ImageData[i] /= ims.ImageData[i];
}
}
else//need to go pixel-wise
{
for (int z = 0; z < ZPlanes; z++)
{
for (int t = 0; t < TimePoints; t++)
{
for (int y = 0; y < ImageHeight; y++)
{
for (int x = 0; x < ImageWidth; x++)
{
*this[x, y, z, t] /= *ims[x, y, z, t];
}
}
}
}
}
}
/// <summary>
/// Copy constructor
/// </summary>
/// <param name="ims">The image to copy</param>
public ImageStack32F(ImageStack32F ims)
{
if (ims == null)
throw new ArgumentNullException(nameof(ims));
if (ims.IsDisposed)
throw new ArgumentException("Can't copy disposed stack");
InitializeAsCopy(ims);
}
/// <summary>
/// Compares every pixel in an image to a given value
/// </summary>
/// <param name="value">The value each pixel should have</param>
/// <param name="image">The image to compare</param>
private void CompareValImage(float value, ImageStack32F image)
{
float* imStart = image.ImageData;
//only compare outside of stride padding
for (long i = 0; i < image.ImageNB / 4; i++)
{
if (i % image.Stride < image.ImageWidth)
Assert.AreEqual(value, imStart[i], Math.Abs(value / 1000), "Found non-matching pixel at position {0}", i);
}
}
/// <summary>
/// Copy constructor
/// </summary>
/// <param name="ims">The image to copy</param>
public ImageStack32F(ImageStack32F ims)
{
if (ims == null)
{
throw new ArgumentNullException(nameof(ims));
}
if (ims.IsDisposed)
{
throw new ArgumentException("Can't copy disposed stack");
}
InitializeAsCopy(ims);
}
public void Construction_WithValidArguments_DimCorrect()
{
int w = 20;
int h = 30;
int z = 40;
int t = 50;
var ims = new ImageStack32F(w, h, z, t, ImageStack.SliceOrders.TBeforeZ);
Assert.AreEqual(ims.ImageWidth, w, "Image width not correct.");
Assert.AreEqual(ims.ImageHeight, h, "Image height not correct.");
Assert.AreEqual(ims.ZPlanes, z, "Image z plane number not correct.");
Assert.AreEqual(ims.TimePoints, t, "Number of timepoints not correct.");
ims.Dispose();
}
/// <summary>
/// Constructs a 16bit stack via rescaling of a 32bit float stack
/// </summary>
/// <param name="ims">The source stack to be copied</param>
/// <param name="min">This value and below will be set to 0</param>
/// <param name="max">This value and above will be set to 65535</param>
public ImageStack16(ImageStack32F ims, float min, float max)
{
if (ims == null)
{
throw new ArgumentNullException(nameof(ims));
}
if (ims.IsDisposed)
{
throw new ArgumentException("Can't copy disposed stack");
}
if (max <= min)
{
throw new ArgumentException("max has to be strictly greater than min");
}
SliceOrder = ims.SliceOrder;
//initialize buffer and dimension properties according to source stack
InitializeImageBuffer(ims.ImageWidth, ims.ImageHeight, ims.ZPlanes, ims.TimePoints, 2);
//loop over pixels, assigning values
for (int z = 0; z < ZPlanes; z++)
{
for (int t = 0; t < TimePoints; t++)
{
for (int y = 0; y < ImageHeight; y++)
{
for (int x = 0; x < ImageWidth; x++)
{
float temp = *ims[x, y, z, t];
temp = (temp - min) / (max - min) * ushort.MaxValue;
if (temp < 0)
{
temp = 0;
}
else if (temp > ushort.MaxValue)
{
temp = ushort.MaxValue;
}
*this[x, y, z, t] = (byte)temp;
}
}
}
}
}
/// <summary>
/// Divide by another float stack pixel-wise
/// </summary>
/// <param name="ims">The stack to divide by</param>
public void Divide(ImageStack32F ims)
{
DisposeGuard();
if (ims.IsDisposed)
throw new ArgumentException("Can't divide by disposed image");
if (!IsCompatible(ims))
throw new ArgumentException("Given image has wrong dimensions or z versus t ordering");
if (Stride == ims.Stride)
for (long i = 0; i < ImageNB / 4; i++)
ImageData[i] /= ims.ImageData[i];
else//need to go pixel-wise
for (int z = 0; z < ZPlanes; z++)
for (int t = 0; t < TimePoints; t++)
for (int y = 0; y < ImageHeight; y++)
for (int x = 0; x < ImageWidth; x++)
*this[x, y, z, t] /= *ims[x, y, z, t];
}
/// <summary>
/// Constructs a 16bit stack via rescaling of a 32bit float stack
/// </summary>
/// <param name="ims">The source stack to be copied</param>
/// <param name="min">This value and below will be set to 0</param>
/// <param name="max">This value and above will be set to 65535</param>
public ImageStack16(ImageStack32F ims, float min, float max)
{
if (ims == null)
throw new ArgumentNullException(nameof(ims));
if (ims.IsDisposed)
throw new ArgumentException("Can't copy disposed stack");
if (max <= min)
throw new ArgumentException("max has to be strictly greater than min");
SliceOrder = ims.SliceOrder;
//initialize buffer and dimension properties according to source stack
InitializeImageBuffer(ims.ImageWidth, ims.ImageHeight, ims.ZPlanes, ims.TimePoints, 2);
//loop over pixels, assigning values
for (int z = 0; z < ZPlanes; z++)
for (int t = 0; t < TimePoints; t++)
for (int y = 0; y < ImageHeight; y++)
for (int x = 0; x < ImageWidth; x++)
{
float temp = *ims[x, y, z, t];
temp = (temp - min) / (max - min) * ushort.MaxValue;
if (temp < 0)
temp = 0;
else if (temp > ushort.MaxValue)
temp = ushort.MaxValue;
*this[x, y, z, t] = (byte)temp;
}
}
public void PixelPointerNull_AfterDispose()
{
var ims = new ImageStack32F(5, 5, 5, 5, ImageStack.SliceOrders.ZBeforeT);
ims.Dispose();
Assert.IsTrue(ims[4, 0, 0, 0] == null);
}
public void ShallowConstruction_OddStride()
{
float* buffer = (float*)Marshal.AllocHGlobal(51);
try
{
var ims = new ImageStack32F(buffer, 51/4, 51, 1, 1, 1, ImageStack.SliceOrders.TBeforeZ);
}
finally
{
Marshal.FreeHGlobal((IntPtr)buffer);
}
}
public void Construction_WithInvalidHeight()
{
var ims = new ImageStack32F(20, 0, 40, 50, ImageStack.SliceOrders.TBeforeZ);
ims.Dispose();
}
public void From16bit_Constructor_Correct()
{
Random rnd = new Random();
var ims16 = new ImageStack16(43, 43, 41, 41, ImageStack.SliceOrders.ZBeforeT);
//quickly fill image with random values
int* buffer = (int*)ims16.ImageData;
long iter = ims16.ImageNB / 4;
for (long i = 0; i < iter; i++)
{
buffer[i] = rnd.Next();
}
var ims32 = new ImageStack32F(ims16);
Assert.AreEqual(ims16.SliceOrder, ims32.SliceOrder);
for (int z = 0; z < ims16.ZPlanes; z++)
for (int t = 0; t < ims16.TimePoints; t++)
for (int y = 0; y < ims16.ImageHeight; y++)
for (int x = 0; x < ims16.ImageWidth; x++)
Assert.AreEqual(*ims16[x, y, z, t], *ims32[x, y, z, t], *ims16[x, y, z, t] / 1000);
ims16.Dispose();
ims32.Dispose();
}
public void CopyConstructor_Correct()
{
var ims = CreateDefaultStack();
ims.SetAll(33.37f);
var copy = new ImageStack32F(ims);
Assert.IsFalse(ims.ImageData == copy.ImageData, "Source and its copy point to the same buffer");
float* sourceStart = ims.ImageData;
float* copyStart = copy.ImageData;
for (long i = 0; i < ims.ImageNB / 4; i++)
Assert.AreEqual(sourceStart[i], copyStart[i], sourceStart[i] / 1000, "Found non-matching pixel");
ims.Dispose();
copy.Dispose();
}
public void RangeCheck_OnPixelAccess()
{
var ims = new ImageStack32F(5, 5, 5, 5, ImageStack.SliceOrders.ZBeforeT);
var p = ims[5, 0, 0, 0];
ims.Dispose();
}