//Put Parts and Sites into a list. Generate string of sequences
private void GeneratePrimers_Click(object sender, RoutedEventArgs e)
{
if (pd1 != null)
{
sw1.SW_SV.Items.Remove(pd1);
pd1 = null;
}
StackPanel activeTab = PD2_manual;
if (PD2_buildTabs.SelectedIndex == 1) { activeTab = PD2_auto; }
int i = 0;
foreach (UIElement elem in activeTab.Children)
{
if (elem.GetType() == typeof(Part))
{
//If list (i.e. L1 module) is full and there are still Parts left
//Create new list and increment index
if (partList.ElementAt(i).Count == 4)
{
partList.Add(new List<Part>());
i++;
}
int elemIndex = activeTab.Children.IndexOf(elem);
Part p = (Part)elem;
//p.updateSites(activeTab, elemIndex);
p.updateSites(activeTab);
Part clone = p.clone();
clone.BorderBrush = p.BorderBrush;
clone.ElementMenu.Items.Remove(clone.PD);
partList.ElementAt(i).Add(clone);
}
}
pd1 = new PrimerDesigner1(partList);
sw1.SW_SV.Items.Add(pd1);
#region Old Generate Primers code
//2D array of each Part and Site sequence, divided into arrays of Parts and flanking sites (i.e. Sites-Parts-Sites)
//int n = activeTab.Children.Count / 3; //Number of Part-Sites sets, not including the two backbone Sites
//_partSiteSets = new UIElement[n + 2][];
//Sites firstFS = ((Sites)VisualTreeHelper.GetChild(activeTab, 0)).clone();
//Sites lastFS = ((Sites)VisualTreeHelper.GetChild(activeTab, activeTab.Children.Count - 1)).clone();
//_partSiteSets[0] = new UIElement[] { firstFS };
//_partSiteSets[n + 1] = new UIElement[] { lastFS };
//for (int i = 0; i < n; i++)
//{
// int j = 3 * i + 1;
// Sites site1 = ((Sites)VisualTreeHelper.GetChild(activeTab, j)).clone();
// Part p0 = ((Part)VisualTreeHelper.GetChild(activeTab, j + 1));
// Part p = p0.clone();
// p.BorderBrush = p0.BorderBrush;
// p.ElementMenu.Items.Remove(p.PD);
// Sites site2 = ((Sites)VisualTreeHelper.GetChild(activeTab, j + 2)).clone();
// UIElement[] subArray = new UIElement[] { site1, p, site2 };
// _partSiteSets[i + 1] = subArray;
//}
////Check that Sites are not used twice
//List<String> sitesList = new List<String>();
////Build checklist by taking the left Site in each set besides the first, plus the last Site (technically the left Site of the vector)
//for (int i = 2; i < _partSiteSets.Length; i++)
//{
// sitesList.Add(((Sites)_partSiteSets[i][0]).Sequence);
//}
////Check sitesList for duplicates
//bool noDupes = true;
//bool noEmpty = true;
////Start by checking sitesList for the first left-hand Site
//String checkThis = ((Sites)_partSiteSets[1][0]).Sequence;
////Break when sitesList has no items left to compare to checkForThis
//int count = sitesList.Count;
//while (sitesList.Count() > 0 /*&& noDupes && noEmpty*/)
//{
// noDupes = !(sitesList.Contains(checkThis));
// noEmpty = checkThis != "site";
// checkThis = sitesList.ElementAt(0);
// sitesList.RemoveAt(0);
//}
//if (noDupes && noEmpty)
//{
// pd1 = new PrimerDesigner1(_partSiteSets);
// sw1.SW_SV.Items.Add(pd1);
//}
//else if (noEmpty && !noDupes)
//{
// MessageBox.Show("Couldn't generate primers. Please check for duplicate fusion sites.");
//}
//else if (!noEmpty && noDupes)
//{
// MessageBox.Show("Couldn't generate primers. Please check for empty fusion sites.");
//}
//else //Both errors present
//{
// MessageBox.Show("Couldn't generate primers. Please check for duplicate and empty fusion sites.");
//}
#endregion
}
//Put Parts and Sites into a list. Generate string of sequences
private void GeneratePrimers_Click(object sender, RoutedEventArgs e)
{
if (pd1 != null)
{
sw1.SW_SV.Items.Remove(pd1);
pd1 = null;
}
StackPanel activeTab = PD2_manual;
if (PD2_buildTabs.SelectedIndex == 1)
{
activeTab = PD2_auto;
}
int i = 0;
foreach (UIElement elem in activeTab.Children)
{
if (elem.GetType() == typeof(Part))
{
//If list (i.e. L1 module) is full and there are still Parts left
//Create new list and increment index
if (partList.ElementAt(i).Count == 4)
{
partList.Add(new List <Part>());
i++;
}
int elemIndex = activeTab.Children.IndexOf(elem);
Part p = (Part)elem;
//p.updateSites(activeTab, elemIndex);
p.updateSites(activeTab);
Part clone = p.clone();
clone.BorderBrush = p.BorderBrush;
clone.ElementMenu.Items.Remove(clone.PD);
partList.ElementAt(i).Add(clone);
}
}
pd1 = new PrimerDesigner1(partList);
sw1.SW_SV.Items.Add(pd1);
#region Old Generate Primers code
//2D array of each Part and Site sequence, divided into arrays of Parts and flanking sites (i.e. Sites-Parts-Sites)
//int n = activeTab.Children.Count / 3; //Number of Part-Sites sets, not including the two backbone Sites
//_partSiteSets = new UIElement[n + 2][];
//Sites firstFS = ((Sites)VisualTreeHelper.GetChild(activeTab, 0)).clone();
//Sites lastFS = ((Sites)VisualTreeHelper.GetChild(activeTab, activeTab.Children.Count - 1)).clone();
//_partSiteSets[0] = new UIElement[] { firstFS };
//_partSiteSets[n + 1] = new UIElement[] { lastFS };
//for (int i = 0; i < n; i++)
//{
// int j = 3 * i + 1;
// Sites site1 = ((Sites)VisualTreeHelper.GetChild(activeTab, j)).clone();
// Part p0 = ((Part)VisualTreeHelper.GetChild(activeTab, j + 1));
// Part p = p0.clone();
// p.BorderBrush = p0.BorderBrush;
// p.ElementMenu.Items.Remove(p.PD);
// Sites site2 = ((Sites)VisualTreeHelper.GetChild(activeTab, j + 2)).clone();
// UIElement[] subArray = new UIElement[] { site1, p, site2 };
// _partSiteSets[i + 1] = subArray;
//}
////Check that Sites are not used twice
//List<String> sitesList = new List<String>();
////Build checklist by taking the left Site in each set besides the first, plus the last Site (technically the left Site of the vector)
//for (int i = 2; i < _partSiteSets.Length; i++)
//{
// sitesList.Add(((Sites)_partSiteSets[i][0]).Sequence);
//}
////Check sitesList for duplicates
//bool noDupes = true;
//bool noEmpty = true;
////Start by checking sitesList for the first left-hand Site
//String checkThis = ((Sites)_partSiteSets[1][0]).Sequence;
////Break when sitesList has no items left to compare to checkForThis
//int count = sitesList.Count;
//while (sitesList.Count() > 0 /*&& noDupes && noEmpty*/)
//{
// noDupes = !(sitesList.Contains(checkThis));
// noEmpty = checkThis != "site";
// checkThis = sitesList.ElementAt(0);
// sitesList.RemoveAt(0);
//}
//if (noDupes && noEmpty)
//{
// pd1 = new PrimerDesigner1(_partSiteSets);
// sw1.SW_SV.Items.Add(pd1);
//}
//else if (noEmpty && !noDupes)
//{
// MessageBox.Show("Couldn't generate primers. Please check for duplicate fusion sites.");
//}
//else if (!noEmpty && noDupes)
//{
// MessageBox.Show("Couldn't generate primers. Please check for empty fusion sites.");
//}
//else //Both errors present
//{
// MessageBox.Show("Couldn't generate primers. Please check for duplicate and empty fusion sites.");
//}
#endregion
}