예제 #1
0
        /// <summary>
        /// Parse command line arguments for Orphan regions command
        /// </summary>
        /// <param name="args">Array of command line arguments.</param>
        private static void OrphanRegionOption(string[] args)
        {
            Orphans options             = new Orphans();
            CommandLineArguments parser = new CommandLineArguments();

            // Add the parameters
            parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format");
            parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", "");

            try
            {
                parser.Parse(args, options);
            }
            catch (ArgumentParserException ex)
            {
                DisplayErrorMessage(ex.Message);
                DisplayErrorMessage(Resources.OrphanRegionsHelp);
                Environment.Exit(-1);
            }

            if (options.Help)
            {
                DisplayErrorMessage(Resources.OrphanRegionsHelp);
            }
            else
            {
                options.DisplayOrpanChromosomes(args[0]);
            }
        }
예제 #2
0
        /// <summary>
        /// Parse command line arguments for Orphan regions command
        /// </summary>
        /// <param name="args">Array of command line arguments.</param>
        private static void OrphanRegionOption(string[] args)
        {
            Orphans options = new Orphans();

            if (options.Usage)
            {
                DisplayErrorMessage(Resources.OrphanRegionsHelp);
            }
            else
            {
                options.DisplayOrpanChromosomes(args[0]);
            }
        }
예제 #3
0
파일: Program.cs 프로젝트: cpatmoore/bio
        /// <summary>
        /// Parse command line arguments for Orphan regions command
        /// </summary>
        /// <param name="args">Array of command line arguments.</param>
        private static void OrphanRegionOption(string[] args)
        {
            Orphans options = new Orphans();
            CommandLineArguments parser = new CommandLineArguments();

            // Add the parameters
            parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format");
            parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", "");

            try
            {
                parser.Parse(args, options);
            }
            catch (ArgumentParserException ex)
            {
                DisplayErrorMessage(ex.Message);
                DisplayErrorMessage(Resources.OrphanRegionsHelp);
                Environment.Exit(-1);
            }

            if (options.Help)
            {
                DisplayErrorMessage(Resources.OrphanRegionsHelp);
            }
            else
            {
                options.DisplayOrpanChromosomes(args[0]);
            }

        }