/// <summary> /// Parse command line arguments for Chimeric regions command /// </summary> /// <param name="args">Array of command line arguments.</param> private static void ChimericRegionOption(string[] args) { ChimericRegions options = new ChimericRegions(); CommandLineArguments parser = new CommandLineArguments(); // Add the parameters parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format"); parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", ""); try { parser.Parse(args, options); } catch (ArgumentParserException ex) { DisplayErrorMessage(ex.Message); DisplayErrorMessage(Resources.ChimericRegionsHelp); Environment.Exit(-1); } if (options.Help) { DisplayErrorMessage(Resources.ChimericRegionsHelp); } else { options.DisplayChimericRegions(args[0]); } }
/// <summary> /// Parse command line arguments for Chimeric regions command /// </summary> /// <param name="args">Array of command line arguments.</param> private static void ChimericRegionOption(string[] args) { ChimericRegions options = new ChimericRegions(); if (options.Usage) { DisplayErrorMessage(Resources.ChimericRegionsHelp); } else { options.DisplayChimericRegions(args[0]); } }
/// <summary> /// Parse command line arguments for Chimeric regions command /// </summary> /// <param name="args">Array of command line arguments.</param> private static void ChimericRegionOption(string[] args) { ChimericRegions options = new ChimericRegions(); CommandLineArguments parser = new CommandLineArguments(); // Add the parameters parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format"); parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", ""); try { parser.Parse(args, options); } catch (ArgumentParserException ex) { DisplayErrorMessage(ex.Message); DisplayErrorMessage(Resources.ChimericRegionsHelp); Environment.Exit(-1); } if (options.Help) { DisplayErrorMessage(Resources.ChimericRegionsHelp); } else { options.DisplayChimericRegions(args[0]); } }