private void MultiAngle_Load(object sender, EventArgs e)
{
// Center parent:
if (Owner != null)
{
Location = new Point(Owner.Location.X + Owner.Width / 2 - Width / 2,
Owner.Location.Y + Owner.Height / 2 - Height / 2);
}
// Load settings:
this.nudMultiAngle_From.Value = Properties.Settings.Default.MultiOffset_From;
this.nudMultiAngle_To.Value = Properties.Settings.Default.MultiOffset_To;
this.zOutputPathTxb.Text = Properties.Settings.Default.MultiAngle_Path;
this.lblInputTDF.Text = Path.GetFileName(mInputTDF);
this.lblSliceNr.Text = mImageIndex.ToString();
this.lblAlgorithm.Text = mReconFunc;
this.lblDecimationFactor.Text = mDecimateFactor.ToString();
this.lblDownscalingFactor.Text = mDownscaleFactor.ToString();
this.lblOffset.Text = mCenter.ToString();
this.lblAngles.Text = (mAngles / Math.PI * 180.0).ToString("0.000");
this.lblPreProcessing.Text = mPreProcess ? "yes" : "no";
this.lblPostProcessing.Text = mPostProcess ? "yes" : "no";
this.lblPhaseRetrieval.Text = mPhaseRetrieval ? "yes" : "no";
this.nudMultiAngle_From.Minimum = 0;
this.nudMultiAngle_From.Maximum = TDFReader.GetNumberOfProjections(mInputTDF) - 1;
this.nudMultiAngle_From.Value = Convert.ToDecimal(this.mAnglesProjTo) - 100;
this.nudMultiAngle_To.Minimum = 0;
this.nudMultiAngle_To.Maximum = TDFReader.GetNumberOfProjections(mInputTDF) - 1;
this.nudMultiAngle_To.Value = Convert.ToDecimal(this.mAnglesProjTo);
}
private void btnConvert_Click(object sender, EventArgs e)
{
string zTDFFile = ((KeyValuePair <string, string>) this.cbxInput.SelectedItem).Key;
IJob zJob;
// Create an instance for the phase retrieval job:
zJob = new TDF2TIFFJob(
zTDFFile,
this.zOutputPathTxb.Text,
(this.chkConsiderSubset.Checked) ? Convert.ToInt32(this.nudTDFToTIFFFrom.Value) : 0,
(this.chkConsiderSubset.Checked) ? Convert.ToInt32(this.nudTDFToTIFFTo.Value) : Convert.ToInt32(this.nudTDFToTIFFTo.Maximum),
(this.chkData.Checked) ? tbxProjectionPrefix.Text : "-",
(this.tbxFlatPrefix.Enabled) ? ((this.chkDataWhite.Checked) ? tbxFlatPrefix.Text : "-") : "-",
(this.tbxDarkPrefix.Enabled) ? ((this.chkDataDark.Checked) ? tbxDarkPrefix.Text : "-") : "-",
this.rbtDirectOrder.Checked,
this.btnTIFFFormat.Checked,
1
);
// Create an instance of JobExecuter with the Phase Retrieval job
// splitting it into several processes (if specified):
JobExecuter zExecuter = new JobExecuter(zJob);
// Execute the job:
zExecuter.Run();
// Start the monitoring of the job:
if (chkData.Checked)
{
mJobMonitor.Run(zExecuter, tbxProjectionPrefix.Text);
}
else
{
if ((chkDataDark.Checked) && !(chkDataWhite.Checked))
{
// Only darks are created:
mJobMonitor.Run(zExecuter, this.tbxDarkPrefix.Text, TDFReader.GetNumberOfDarks(zTDFFile));
}
else
{
if (!(chkDataDark.Checked) && (chkDataWhite.Checked))
{
// Only flats are created:
mJobMonitor.Run(zExecuter, this.tbxFlatPrefix.Text, TDFReader.GetNumberOfFlats(zTDFFile));
}
else
{
// Both flats and darks are created but STP-Core first creates
// flats and then darks, so monitor the dark prefix:
mJobMonitor.Run(zExecuter, this.tbxDarkPrefix.Text, TDFReader.GetNumberOfDarks(zTDFFile));
}
}
}
}
private void btnRun_Click(object sender, EventArgs e)
{
// Run Job Convert To TDF:
IJob zJob;
// Execute with conventional flat fielding:
zJob = new PreProcessingJob(
// Get combobox selection (in handler)
this.mInputTDF,
this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr.tdf",
0,
TDFReader.GetNumberOfSlices(mInputTDF) - 1,
mAirSx,
mAirDx,
this.mFlatEnd, // use flat at the end
this.mHalfHalf,
this.mHalfHalfLine,
this.mExtFOV,
this.mExtFOVRight,
this.mExtFOVOverlap,
this.mExtFOVNormalize,
this.mExtFOVAverage,
this.mRingRemoval,
this.mDynamicFlatFielding,
Convert.ToInt32(Properties.Settings.Default.FormSettings_NrOfProcesses),
false,
"-"
);
// Create an instance of JobExecuter with the pre processing job:
JobExecuter zExecuter = new JobExecuter(zJob);
// Execute the job splitting it with several processes (if specified):
zExecuter.Run();
// Start the monitoring of the job:
mJobMonitor.Run(zExecuter, "sino");
this.mPreProcessOnGoing = true;
this.lblPreProcessing.Enabled = true;
this.lblPhaseRetrieval.Enabled = false;
this.lblReconstruction.Enabled = false;
// Reset status bar:
this.toolStripStatusLabel1.Text = string.Empty;
}
private void rbtSinogramOrder_CheckedChanged(object sender, EventArgs e)
{
this.SuspendLayout();
if (rbtSinogramOrder.Checked)
{
this.tbxProjectionPrefix.Text = "sino";
this.lblProjections.Text = "Sinograms:";
this.lblProjections.Location = new Point(22, 26);
if (File.Exists(zInputTDF))
{
this.nudTDFToTIFFFrom.Maximum = TDFReader.GetNumberOfSlices(zInputTDF) - 1;
this.nudTDFToTIFFTo.Maximum = TDFReader.GetNumberOfSlices(zInputTDF) - 1;
}
}
this.ResumeLayout();
}
private void cbxInput_DropDownClosed(object sender, EventArgs e)
{
this.SuspendLayout();
zInputTDF = ((KeyValuePair <string, string>) this.cbxInput.SelectedItem).Key;
// Check if selected TDF exists:
if (File.Exists(zInputTDF))
{
if (rbtDirectOrder.Checked)
{
this.nudTDFToTIFFFrom.Maximum = TDFReader.GetNumberOfProjections(zInputTDF) - 1;
this.nudTDFToTIFFTo.Maximum = TDFReader.GetNumberOfProjections(zInputTDF) - 1;
}
else
{
this.nudTDFToTIFFFrom.Maximum = TDFReader.GetNumberOfSlices(zInputTDF) - 1;
this.nudTDFToTIFFTo.Maximum = TDFReader.GetNumberOfSlices(zInputTDF) - 1;
}
this.chkDataDark.Enabled = (TDFReader.HasDarks(zInputTDF));
if (!(this.chkDataDark.Enabled))
{
this.tbxDarkPrefix.Enabled = false;
}
else
{
this.chkDataDark_CheckedChanged(null, null);
}
this.chkDataWhite.Enabled = (TDFReader.HasDarks(zInputTDF));
if (!(this.chkDataWhite.Enabled))
{
this.tbxFlatPrefix.Enabled = false;
}
else
{
this.chkDataWhite_CheckedChanged(null, null);
}
}
this.ResumeLayout();
}
private void runPhaseRetrieval(object sender, EventArgs e)
{
// Run Job Convert To TDF:
IJob zJob;
// Execute with conventional flat fielding:
mPreProcessOnGoing = false;
mReconstructionOnGoing = false;
// Execute with conventional flat fielding:
zJob = new PhaseRetrievalJob(
this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr.tdf",
this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr_phrt.tdf",
this.mMethod,
0,
TDFReader.GetNumberOfProjections(this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr.tdf") - 1,
this.mParam1,
this.mParam2,
this.mDistance,
this.mEnergy,
this.mPixelsize,
this.mPad,
Convert.ToInt32(Properties.Settings.Default.FormSettings_NrOfProcesses)
);
// Create an instance of JobExecuter with the pre processing job:
JobExecuter zExecuter = new JobExecuter(zJob);
// Execute the job splitting it with several processes (if specified):
zExecuter.Run();
mJobMonitor.Run(zExecuter, "tomo");
// Reset status bar:
this.toolStripStatusLabel1.Text = string.Empty;
mPhaseRetrievalOnGoing = true;
}
private void btnConvert_Click(object sender, EventArgs e)
{
// Run GDEI Job:
IJob zJob;
string zInputFile_1 = ((KeyValuePair <string, string>) this.cbxGDEI_Input2.SelectedItem).Key;
string zInputFile_2 = ((KeyValuePair <string, string>) this.cbxGDEI_Input1.SelectedItem).Key;
string zInputFile_3 = ((KeyValuePair <string, string>) this.cbxGDEI_Input3.SelectedItem).Key;
String[] zSubStrings = Path.GetFileName(zInputFile_1).Split('_');
string zOutputPrefix = string.Empty;
for (int i = 0; i < zSubStrings.Length - 1; i++)
{
zOutputPrefix += zSubStrings[i];
}
string zOutputFile_Abs = Properties.Settings.Default.FormSettings_WorkingPath + Path.DirectorySeparatorChar + zOutputPrefix + "_abs" + Properties.Settings.Default.TomoDataFormatExtension;
string zOutputFile_Refr = Properties.Settings.Default.FormSettings_WorkingPath + Path.DirectorySeparatorChar + zOutputPrefix + "_ref" + Properties.Settings.Default.TomoDataFormatExtension;
string zOutputFile_Sca = Properties.Settings.Default.FormSettings_WorkingPath + Path.DirectorySeparatorChar + zOutputPrefix + "_sca" + Properties.Settings.Default.TomoDataFormatExtension;
// Create an instance for the phase retrieval job:
zJob = new GDEIJob(
zInputFile_1,
zInputFile_2,
zInputFile_3,
zOutputFile_Abs,
zOutputFile_Refr,
zOutputFile_Sca,
0, //(this.chkConsiderSubset.Checked) ? Convert.ToInt32(this.nudConvertToTDFFrom.Value) : 0,
TDFReader.GetNumberOfSlices(zInputFile_1) - 1, //-1, //(this.chkConsiderSubset.Checked) ? Convert.ToInt32(this.nudConvertToTDFTo.Value) : -1,
this.mAirSx,
this.mAirDx,
this.mFlatEnd,
this.mHalfHalf,
this.mHalfHalfLine,
this.mExtFOV,
this.mExtFOVRight,
this.mExtFOVOverlap,
this.mExtFOVNormalize,
this.mExtFOVAverage,
this.mRingRemoval,
this.mDynamicFlatFielding,
Convert.ToInt32(this.nudGDEI_ShiftVert1.Value),
Convert.ToInt32(this.nudGDEI_ShiftHoriz1.Value),
Convert.ToInt32(this.nudGDEI_ShiftVert2.Value),
Convert.ToInt32(this.nudGDEI_ShiftHoriz2.Value),
Convert.ToInt32(this.nudGDEI_ShiftVert3.Value),
Convert.ToInt32(this.nudGDEI_ShiftHoriz3.Value),
Convert.ToDouble(this.nudGDEI_r1.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_r1Exp.Value)),
Convert.ToDouble(this.nudGDEI_r2.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_r2Exp.Value)),
Convert.ToDouble(this.nudGDEI_r3.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_r3Exp.Value)),
Convert.ToDouble(this.nudGDEI_d1.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_d1Exp.Value)),
Convert.ToDouble(this.nudGDEI_d2.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_d2Exp.Value)),
Convert.ToDouble(this.nudGDEI_d3.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_d3Exp.Value)),
Convert.ToDouble(this.nudGDEI_dd1.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_dd1Exp.Value)),
Convert.ToDouble(this.nudGDEI_dd2.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_dd2Exp.Value)),
Convert.ToDouble(this.nudGDEI_dd3.Value) * Math.Pow(10, Convert.ToDouble(this.nudGDEI_dd3Exp.Value)),
Convert.ToInt32(Properties.Settings.Default.FormSettings_NrOfProcesses)
);
// Create an instance of JobExecuter with the Phase Retrieval job
// splitting it into several processes (if specified):
JobExecuter zExecuter = new JobExecuter(zJob);
// Execute the job:
zExecuter.Run();
// Start the monitoring of the job:
mJobMonitor.Run(zExecuter, "sino");
// Reset status bar:
this.toolStripStatusLabel1.Text = string.Empty;
}
private void runReconstruction(object sender, EventArgs e)
{
// Run Job Convert To TDF:
IJob zJob;
mPreProcessOnGoing = false;
mPhaseRetrievalOnGoing = false;
string zOutputPath = Properties.Settings.Default.FormSettings_OutputPath + Path.DirectorySeparatorChar +
Path.GetFileNameWithoutExtension(this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr_phrt.tdf") +
Path.DirectorySeparatorChar + @"slices" + Path.DirectorySeparatorChar;
if (mAngles_ProjTo == 0)
{
mAngles_ProjTo = TDFReader.GetNumberOfProjections(this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr_phrt.tdf") - 1;
}
// Create an instance for the reconstruction job:
zJob = new ReconstructionJob(
// Get combobox selection (in handler)
this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr_phrt.tdf",
zOutputPath,
false,
mAirSx,
mAirDx,
mFlatEnd,
mHalfHalf,
mHalfHalfLine,
mExtFOV,
mExtFOVRight,
mExtFOVOverlap,
mExtFOVNormalize,
mExtFOVAverage,
mRingRemoval,
mAngles,
mAngles_ProjFrom,
mAngles_ProjTo,
mCenter,
mReconFunc,
mReconParam1,
mScale,
mOverPaddding,
mLogTransform,
mCircle,
mZeroneMode,
mCorrectionOffset,
0,
TDFReader.GetNumberOfSlices(this.mInputTDF.Remove(this.mInputTDF.Length - 4) + "_corr_phrt.tdf") - 1,
Convert.ToInt32(Properties.Settings.Default.FormSettings_NrOfProcesses),
mDecimateFactor,
mDownscaleFactor,
mPostProcess,
mPostProcessPolarFilt,
mPostProcessConvertArgs,
mPostProcessCropArgs,
mDynamicFlatFielding,
mRolling,
mRollShift
);
// Create an instance of JobExecuter with the pre processing job:
JobExecuter zExecuter = new JobExecuter(zJob);
// Execute the job splitting it with several processes (if specified):
zExecuter.Run();
// Start the monitoring of the job:
mJobMonitor.Run(zExecuter, "slice");
this.mReconstructionOnGoing = true;
// Reset status bar:
this.toolStripStatusLabel1.Text = string.Empty;
}