public void TestSetup()
{
this.fullRawFile = new RawFileImpl();
this.fullRawFile.Open(@TestContext.CurrentContext.TestDirectory + "/../../../data//Standard_Protein_FT2_Lock_Re5.RAW");
this.ms2OnlyRawFile = new RawFileImpl();
this.ms2OnlyRawFile.Open(@TestContext.CurrentContext.TestDirectory + "/../../../data//Full_scan_apiginin_ms2.RAW");
}
private static IRawFile2 DoGetRawFileReader(string aFileName, bool isTandemMS3 = false)
{
var fileName = aFileName.ToLower();
IRawFile2 result;
if (fileName.EndsWith(".mzdata.xml") || fileName.EndsWith(".mzdata"))
{
result = new MzDataImpl();
}
else if (fileName.EndsWith(".mzxml"))
{
result = new MzXMLImpl2();
}
//else if (Directory.Exists(fileName))
//{
// result = new AgilentDirectoryImpl();
//}
else if (fileName.EndsWith("mgf"))
{
result = new MascotGenericFormatImpl();
}
//else if (fileName.EndsWith("wiff"))
//{
// result = new WiffImpl();
//}
else
{
result = new RawFileImpl();
}
if (isTandemMS3)
{
result.MasterScanFinder = new MasterScanParallelMS3Finder();
}
return(result);
}