public void TestRead()
{
MaxQuantPeptideTextReader reader = new MaxQuantPeptideTextReader();
var spectra = reader.ReadFromFile(TestContext.CurrentContext.TestDirectory + "/../../../data/maxquant_sites.txt");
Assert.AreEqual(162, spectra.Count);
Assert.AreEqual("LQR_SCS_Nu_CA_SAX_Online_071226_06", spectra[0].Query.FileScan.Experimental);
Assert.AreEqual(12044, spectra[0].Query.FileScan.FirstScan);
Assert.AreEqual(0.000888, spectra[0].ExpectValue, 0.000001);
Assert.AreEqual(21.4, spectra[0].Score, 0.0001);
Assert.AreEqual("ASEDES*DLEDEEEKSQEDTEQK", spectra[0].Sequence);
Assert.AreEqual("#S*GEDEQQEQTIAEDLVVTK", spectra[15].Sequence);
Assert.AreEqual("*", reader.ModificationMap["(ph)"]);
Assert.AreEqual("#", reader.ModificationMap["(ac)"]);
Assert.AreEqual("@", reader.ModificationMap["(ox)"]);
}
