public void TestReadFromDirectory()
{
List <DetectabilityEntry> deList = DetectabilityEntry.ReadFromDirectory(@TestContext.CurrentContext.TestDirectory + "/../../../data//detectability");
Assert.AreEqual(135, deList.Count);
Assert.AreEqual("APHWTSASLTEAAAHPHSPEMK", deList[1].Peptide);
Assert.AreEqual("IPI:IPI00206171.1|", deList[1].Protein);
Assert.AreEqual(0.44827, deList[1].Detectability, 0.00001);
Assert.AreEqual(10, deList[1].Position);
//DetectabilityEntry.WriteToFile(TestContext.CurrentContext.TestDirectory + "/../../../data//IPI00206171.detectability",deList);
}
public IEnumerable <string> Process(string fastaFilename)
{
var fi = new FileInfo(fastaFilename).FullName;
SystemUtils.Execute(this.predictorExeFilePath, "-F \"" + fi + "\"");
DirectoryInfo di = new FileInfo(fastaFilename).Directory;
List <DetectabilityEntry> deList = DetectabilityEntry.ReadFromDirectory(di.FullName);
string detectabilityFilename = FileUtils.ChangeExtension(fastaFilename, "detectability");
DetectabilityEntry.WriteToFile(detectabilityFilename, deList);
DetectabilityEntry.DeleteFromDirectory(di.FullName);
return(new[] { detectabilityFilename });
}
