/** Tests the comparions of symbols */
public void TestEquals()
{
char[] adenine = { 'A', 'd', 'e', 'n', 'i', 'n', 'e' };
Symbol sym1 = new Symbol('a', "Ade", new string(adenine));
Symbol sym2 = new Symbol('a', "Ade", "Adenine");
Symbol sym3 = new Symbol('u', "Ura", "Uracil");
Assert.AreEqual(true, sym1.Equals(sym2));
Assert.AreEqual(true, sym2.Equals(sym1));
Assert.AreEqual(false, sym1.Equals(sym3));
Assert.AreEqual(false, sym3.Equals(sym1));
}
/// <summary>
/// Compares two symbol and returns the "similarity" (weight) between the symbols
/// </summary>
/// <param name="symbol1">First symbol.</param>
/// <param name="symbol2">Second symbol.</param>
/// <returns>Returns the "similarity" (weight) between the symbols.</returns>
protected double Compare
(Symbol symbol1, Symbol symbol2)
{
if (repeat.weights == null)
return symbol1.Equals(symbol2) ? 1.0 : 0.0;
return repeat.Weight(symbol1, symbol2);
}
/** Tests the comparision with a meta symbol */
public void TestEquals()
{
SymbolMeta sym = new SymbolMeta('X', "XXX", "Unknown");
Symbol sym2 = new Symbol('a', "Ade", "Adenine");
Symbol sym3 = new Symbol('u', "Ura", "Uracil");
Assert.AreEqual(true, sym.Equals(sym2));
Assert.AreEqual(true, sym2.Equals(sym));
sym.Add(sym2);
Assert.AreEqual(true, sym.Equals(sym2));
Assert.AreEqual(true, sym2.Equals(sym));
Assert.AreEqual(false, sym.Equals(sym3));
Assert.AreEqual(false, sym3.Equals(sym));
sym.Add(sym3);
Assert.AreEqual(true, sym.Equals(sym));
Assert.AreEqual(true, sym.Equals(sym2));
Assert.AreEqual(true, sym.Equals(sym3));
}
/// <summary>
/// Two symbols are equal if the have same name or at least on of the is
/// a meta symbol which matches a set of symbols. This methods expects
/// a non-null symbol as argument.
/// <para></para>
/// First the name of symbol is compared and 2nd comparison is done based on its meta type
/// </summary>
/// <param name="symbol">symbol Symbol to compare with.</param>
/// <returns>true: symbols are equal, false: otherwise.</returns>
public virtual Boolean Equals(Symbol symbol)
{
if (symbol.Name == this.Name)
return true;
if(symbol is SymbolMeta)
return symbol.Equals(this);
return false;
}
