public void TestConstructor () {
Sequence seq = new Sequence( AlphabetType.DNA, "atcg" );
Match m = new Match( voidPattern, seq, 3, 2, +1, 1 );
Assert.AreEqual( 3, m.Start );
Assert.AreEqual( 2, m.Length );
Assert.AreEqual( 1, m.Strand );
Assert.AreEqual( seq, m.BaseSequence );
Assert.AreEqual( "cg", m.Letters() );
Assert.AreEqual( 1.0, m.Similarity, 1e-3 );
}
public void TestSetMatch () {
Sequence seq = new Sequence( AlphabetType.DNA, "atcg" );
Match m1 = new Match( null );
Match m2 = new Match( null );
m1.Set( seq, 3, 2, +1, 0.5 );
m2.Set( m1 );
Assert.AreEqual( seq, m2.BaseSequence );
Assert.AreEqual( 3, m2.Start );
Assert.AreEqual( 2, m2.Length );
Assert.AreEqual( 1, m2.Strand );
Assert.AreEqual( 0.5, m2.Similarity, 1e-3 );
Assert.AreEqual( "cg", m2.Letters() );
}