public void FillTablesAndCharts() { DisplayUtility.FillDataGridView(dgv_fileList, Sweet.lollipop.get_files(Sweet.lollipop.input_files, new Purpose[] { Purpose.Identification, Purpose.Quantification }).Select(c => new DisplayInputFile(c))); DisplayInputFile.FormatInputFileTable(dgv_fileList, new Purpose[] { Purpose.Identification, Purpose.Quantification }); dgv_fileList.ReadOnly = true; if (rb_displayIdentificationComponents.Checked && Sweet.lollipop.raw_experimental_components.Count > 0) { DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_experimental_components.Select(c => new DisplayComponent(c))); } if (rb_displayQuantificationComponents.Checked && Sweet.lollipop.raw_quantification_components.Count > 0) { DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_quantification_components.Select(c => new DisplayComponent(c))); } DisplayComponent.FormatComponentsTable(dgv_rawComponents); rtb_raw_components_counts.Text = ResultsSummaryGenerator.raw_components_report(); NeuCodePairs pairs_form = (MdiParent as ProteoformSweet).neuCodePairs; if (Sweet.lollipop.neucode_labeled && pairs_form.ReadyToRunTheGamut()) { pairs_form.RunTheGamut(false); } }
private void dgv_ET_Peak_List_CellClick(object sender, MouseEventArgs e) { int clickedRow = dgv_ET_Peak_List.HitTest(e.X, e.Y).RowIndex; int clickedCol = dgv_ET_Peak_List.HitTest(e.X, e.Y).ColumnIndex; if (clickedRow < Sweet.lollipop.et_relations.Count && clickedRow >= 0 && clickedCol >= 0 && clickedCol < dgv_ET_Peak_List.ColumnCount) { if (e.Button == MouseButtons.Left) { ct_ET_peakList.ChartAreas[0].AxisX.StripLines.Clear(); DeltaMassPeak selected_peak = (dgv_ET_Peak_List.Rows[clickedRow].DataBoundItem as DisplayObject).display_object as DeltaMassPeak; DisplayUtility.GraphSelectedDeltaMassPeak(ct_ET_peakList, selected_peak, Sweet.lollipop.et_relations); } else { if (e.Button == MouseButtons.Right && clickedRow >= 0 && clickedRow < Sweet.lollipop.et_relations.Count) { ContextMenuStrip ET_peak_List_Menu = new ContextMenuStrip(); int position_xy_mouse_row = dgv_ET_Peak_List.HitTest(e.X, e.Y).RowIndex; DisplayDeltaMassPeak selected_peak = dgv_ET_Peak_List.Rows[clickedRow].DataBoundItem as DisplayDeltaMassPeak; if (position_xy_mouse_row > 0) { ET_peak_List_Menu.Items.Add("Increase Experimental Mass " + Lollipop.MONOISOTOPIC_UNIT_MASS + " Da").Name = "IncreaseMass"; ET_peak_List_Menu.Items.Add("Decrease Experimental Mass " + Lollipop.MONOISOTOPIC_UNIT_MASS + " Da").Name = "DecreaseMass"; } ET_peak_List_Menu.Show(dgv_ET_Peak_List, new Point(e.X, e.Y)); //event menu click ET_peak_List_Menu.ItemClicked += new ToolStripItemClickedEventHandler((s, ev) => ET_peak_List_Menu_ItemClicked(s, ev, selected_peak)); } } } }
private void tb_filter1_TextChanged(object sender, EventArgs e) { int selected_index = Lollipop.file_lists.ToList().IndexOf(cmb_loadTable1.Text); DisplayUtility.FillDataGridView(dgv_loadFiles1, ExtensionMethods.filter(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]), tb_filter1.Text).OfType <InputFile>().Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles1, Lollipop.file_types[selected_index]); }
private void clear_files(ComboBox cmb, DataGridView dgv) { SaveState.lollipop.input_files = SaveState.lollipop.input_files.Except(SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex])).ToList(); match_files(); DisplayUtility.FillDataGridView(dgv, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[cmb.SelectedIndex]); }
private void add_files(ComboBox cmb, DataGridView dgv) { int selected_index = Lollipop.file_lists.ToList().IndexOf(cmb.Text); OpenFileDialog openFileDialog = new OpenFileDialog(); openFileDialog.Title = cmb.SelectedItem.ToString(); openFileDialog.Filter = Lollipop.file_filters[selected_index]; openFileDialog.Multiselect = true; DialogResult dr = openFileDialog.ShowDialog(); if (dr == DialogResult.OK) { Sweet.lollipop.enter_input_files(openFileDialog.FileNames, Lollipop.acceptable_extensions[selected_index], Lollipop.file_types[selected_index], Sweet.lollipop.input_files, true); refresh_dgvs(); if (openFileDialog.FileNames.Any(f => Path.GetExtension(f) == ".raw")) { ValidateThermoMsFileReaderVersion(); } } DisplayUtility.FillDataGridView(dgv, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[selected_index]); }
void ct_LysineCount_MouseClick(object sender, MouseEventArgs e) { if (e.Button == MouseButtons.Left) { DisplayUtility.tooltip_graph_display(ct_LysineCount_tt, e, ct_LysineCount, ct_LysineCount_prevPosition); } }
void ct_IntensityRatio_MouseClick(object sender, MouseEventArgs e) { if (e.Button == MouseButtons.Left) { DisplayUtility.tooltip_graph_display(ct_intensityRatio_tt, e, ct_IntensityRatio, ct_intensityRatio_prevPosition); } }
private void ct_EE_peakList_MouseClick(object sender, MouseEventArgs e) { if (e.Button == MouseButtons.Left) { DisplayUtility.tooltip_graph_display(ct_EE_peakList_tt, e, ct_EE_peakList, ct_EE_peakList_prevPosition); } }
private void btn_clearFiles_Click(object sender, EventArgs e) { SaveState.lollipop.input_files = SaveState.lollipop.input_files.Except(SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex])).ToList(); DisplayUtility.FillDataGridView(dgv_loadFiles, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]); set_Make_Database_Button(); }
//Special histogram counting relations of mass difference from unmodified private void cb_discoveryHistogram_CheckedChanged(object sender, EventArgs e) { if (cb_discoveryHistogram.Checked) { Cursor = Cursors.WaitCursor; if (et_histogram_from_unmod.Count == 0) { ProteoformCommunity community = new ProteoformCommunity(); et_histogram_from_unmod = community.relate(Sweet.lollipop.target_proteoform_community.experimental_proteoforms.Where(ex => ex.accepted).ToArray(), Sweet.lollipop.target_proteoform_community.theoretical_proteoforms.Where(t => t.ptm_set.mass == 0).ToArray(), ProteoformComparison.ExperimentalTheoretical, false, Environment.CurrentDirectory, false); } DisplayUtility.GraphRelationsChart(ct_ET_Histogram, et_histogram_from_unmod, "relations", true); // Show the raw relations in the table tb_relationTableFilter.TextChanged -= tb_relationTableFilter_TextChanged; tb_relationTableFilter.Text = ""; tb_relationTableFilter.TextChanged += tb_relationTableFilter_TextChanged; DisplayUtility.FillDataGridView(dgv_ET_Relations, et_histogram_from_unmod.Select(r => new DisplayProteoformRelation(r))); // Get rid of the stripline by default cb_Graph_lowerThreshold.Checked = false; Cursor = Cursors.Default; } else { DisplayUtility.GraphRelationsChart(ct_ET_Histogram, Sweet.lollipop.et_relations, "relations", true); DisplayUtility.FillDataGridView(dgv_ET_Relations, Sweet.lollipop.et_relations.Select(r => new DisplayProteoformRelation(r)).ToList()); cb_Graph_lowerThreshold.Checked = true; tb_relationTableFilter.TextChanged -= tb_relationTableFilter_TextChanged; tb_relationTableFilter.Text = ""; tb_relationTableFilter.TextChanged += tb_relationTableFilter_TextChanged; } }
private void display_light_proteoforms() { List <IAggregatable> components = selected_pf == null ? new List <IAggregatable>() : rb_displayIdentificationComponents.Checked ? selected_pf.aggregated : rb_displayLightQuantificationComponents.Checked ? selected_pf.lt_quant_components.ToList <IAggregatable>() : selected_pf.hv_quant_components.ToList <IAggregatable>(); if (Sweet.lollipop.neucode_labeled && rb_displayIdentificationComponents.Checked) { DisplayUtility.FillDataGridView(dgv_AcceptNeuCdLtProteoforms, components.Select(c => new DisplayNeuCodePair(c as NeuCodePair))); } else if (rb_displayIdentificationComponents.Checked && selected_pf != null && selected_pf.topdown_id) { DisplayUtility.FillDataGridView(dgv_AcceptNeuCdLtProteoforms, (selected_pf as TopDownProteoform).topdown_hits.Select(h => new DisplayTopDownHit(h))); } else { DisplayUtility.FillDataGridView(dgv_AcceptNeuCdLtProteoforms, components.Select(c => new DisplayComponent(c as Component))); } if (Sweet.lollipop.neucode_labeled && rb_displayIdentificationComponents.Checked) { DisplayNeuCodePair.FormatNeuCodeTable(dgv_AcceptNeuCdLtProteoforms); } else if (rb_displayIdentificationComponents.Checked && selected_pf != null && selected_pf.topdown_id) { DisplayTopDownHit.FormatTopDownHitsTable(dgv_AcceptNeuCdLtProteoforms); } else { DisplayComponent.FormatComponentsTable(dgv_AcceptNeuCdLtProteoforms); } }
private void btn_inclusion_list_selected_families_Click(object sender, EventArgs e) { object[] selected = DisplayUtility.get_selected_objects(dgv_main); List <ProteoformFamily> families = selected.OfType <ProteoformFamily>().ToList(); write_inclusion_list(families.SelectMany(f => f.experimental_proteoforms).ToList()); }
private void btn_downloadUniProtPtmList_Click(object sender, EventArgs e) { SaveState.lollipop.enter_uniprot_ptmlist(); DisplayUtility.FillDataGridView(dgv_loadFiles, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]); btn_downloadUniProtPtmList.Enabled = false; }
private void drag_drop(DragEventArgs e, ComboBox cmb, DataGridView dgv) { string[] files = (string[])e.Data.GetData(DataFormats.FileDrop); SaveState.lollipop.enter_input_files(files, Lollipop.acceptable_extensions[cmb.SelectedIndex], Lollipop.file_types[cmb.SelectedIndex], SaveState.lollipop.input_files); DisplayUtility.FillDataGridView(dgv, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[cmb.SelectedIndex]); }
private void btn_downloadUniProtPtmList_Click(object sender, EventArgs e) { Lollipop.enter_uniprot_ptmlist(Environment.CurrentDirectory); DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]); btn_downloadUniProtPtmList.Enabled = false; SetMakeDatabaseButton(); }
private void tb_relationTableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_relations = tb_relationTableFilter.Text == "" ? (cb_discoveryHistogram.Checked ? et_histogram_from_unmod.OfType <ProteoformRelation>().Select(p => new DisplayProteoformRelation(p)) : Sweet.lollipop.et_relations.OfType <ProteoformRelation>().Select(p => new DisplayProteoformRelation(p))) : (ExtensionMethods.filter((cb_discoveryHistogram.Checked ? et_histogram_from_unmod.OfType <ProteoformRelation>().Select(p => new DisplayProteoformRelation(p)) : Sweet.lollipop.et_relations.OfType <ProteoformRelation>().Select(p => new DisplayProteoformRelation(p))), tb_relationTableFilter.Text)); DisplayUtility.FillDataGridView(dgv_ET_Relations, selected_relations); DisplayProteoformRelation.FormatRelationsGridView(dgv_ET_Relations, true, false, cb_discoveryHistogram.Checked); }
private void btn_clearFiles_Click(object sender, EventArgs e) { List <InputFile> files_to_remove = Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).ToList(); Sweet.save_actions.RemoveAll(a => files_to_remove.Any(f => a.Contains(f.complete_path))); Sweet.lollipop.input_files = Sweet.lollipop.input_files.Except(files_to_remove).ToList(); DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]); }
private void tb_peakTableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_peaks = tb_peakTableFilter.Text == "" ? SaveState.lollipop.ee_peaks : ExtensionMethods.filter(SaveState.lollipop.ee_peaks, tb_peakTableFilter.Text); DisplayUtility.FillDataGridView(dgv_EE_Peaks, selected_peaks.OfType <DeltaMassPeak>()); DisplayUtility.FormatPeakListGridView(dgv_EE_Peaks, true); }
public void FillTablesAndCharts() { reload_database_list(); DisplayUtility.FillDataGridView(dgv_Database, SaveState.lollipop.target_proteoform_community.theoretical_proteoforms.Select(t => new DisplayTheoreticalProteoform(t))); initialize_table_bindinglist(); DisplayTheoreticalProteoform.FormatTheoreticalProteoformTable(dgv_Database); DisplayUtility.FillDataGridView(dgv_unlocalizedModifications, SaveState.lollipop.theoretical_database.unlocalized_lookup.Values.Select(m => new DisplayUnlocalizedModification(m))); DisplayUnlocalizedModification.FormatUnlocalizedModificationTable(dgv_unlocalizedModifications); }
private void fill_theoreticals(string filter) { IEnumerable <object> theoreticals = filter == "" ? Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.theoretical_proteoforms) : ExtensionMethods.filter(Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.theoretical_proteoforms), filter); DisplayUtility.FillDataGridView(dgv_main, theoreticals.OfType <TheoreticalProteoform>().Select(t => new DisplayTheoreticalProteoform(t))); DisplayTheoreticalProteoform.FormatTheoreticalProteoformTable(dgv_main); }
private void tb_tableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_theoreticals = tb_tableFilter.Text == "" ? SaveState.lollipop.target_proteoform_community.theoretical_proteoforms : ExtensionMethods.filter(SaveState.lollipop.target_proteoform_community.theoretical_proteoforms, tb_tableFilter.Text); DisplayUtility.FillDataGridView(dgv_Database, selected_theoreticals.OfType <TheoreticalProteoform>().Select(t => new DisplayTheoreticalProteoform(t))); DisplayTheoreticalProteoform.FormatTheoreticalProteoformTable(dgv_Database); }
private void tb_tableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_aggregates = tb_tableFilter.Text == "" ? SaveState.lollipop.target_proteoform_community.experimental_proteoforms : ExtensionMethods.filter(SaveState.lollipop.target_proteoform_community.experimental_proteoforms, tb_tableFilter.Text); DisplayUtility.FillDataGridView(dgv_AggregatedProteoforms, selected_aggregates.OfType <ExperimentalProteoform>().Select(ep => new DisplayExperimentalProteoform(ep))); DisplayExperimentalProteoform.FormatAggregatesTable(dgv_AggregatedProteoforms); }
private void tb_relationTableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_peaks = tb_relationTableFilter.Text == "" ? displayRelations : ExtensionMethods.filter(displayRelations.ToList(), tb_relationTableFilter.Text); DisplayUtility.FillDataGridView(dgv_EE_Relations, selected_peaks); DisplayProteoformRelation.FormatRelationsGridView(dgv_EE_Relations, false, true); }
private void tb_tableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_td = tb_tableFilter.Text == "" ? Sweet.lollipop.topdown_proteoforms : ExtensionMethods.filter(Sweet.lollipop.topdown_proteoforms, tb_tableFilter.Text); DisplayUtility.FillDataGridView(dgv_TD_proteoforms, selected_td.OfType <TopDownProteoform>().Select(t => new DisplayTopDownProteoform(t))); DisplayTopDownProteoform.FormatTopDownTable(dgv_TD_proteoforms, false); }
private void reload_dgvs() { DisplayUtility.FillDataGridView(dgv_loadFiles1, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable1.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayUtility.FillDataGridView(dgv_loadFiles2, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable2.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayUtility.FillDataGridView(dgv_loadFiles3, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable3.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles1, Lollipop.file_types[cmb_loadTable1.SelectedIndex]); DisplayInputFile.FormatInputFileTable(dgv_loadFiles2, Lollipop.file_types[cmb_loadTable2.SelectedIndex]); DisplayInputFile.FormatInputFileTable(dgv_loadFiles3, Lollipop.file_types[cmb_loadTable3.SelectedIndex]); }
private void dgv_RawQuantComp_MI_masses_CellContentClick(object sender, DataGridViewCellEventArgs e) { if (e.RowIndex >= 0) { Component c = ((Component)((DisplayComponent)this.dgv_rawComponents.Rows[e.RowIndex].DataBoundItem).display_object); DisplayUtility.FillDataGridView(dgv_chargeStates, c.charge_states.Select(cs => new DisplayChargeState(cs))); DisplayChargeState.FormatChargeStateTable(dgv_chargeStates); } }
public void reload_database_list() { cmb_loadTable.Items.Clear(); cmb_loadTable.Items.AddRange(Lollipop.file_lists); cmb_loadTable.SelectedIndex = 2; DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]); initialize_table_bindinglist(); }
private void tb_peakTableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_peaks = tb_peakTableFilter.Text == "" ? Sweet.lollipop.et_peaks : ExtensionMethods.filter(Sweet.lollipop.et_peaks, tb_peakTableFilter.Text); DisplayUtility.FillDataGridView(dgv_ET_Peak_List, selected_peaks.OfType <DeltaMassPeak>().Select(p => new DisplayDeltaMassPeak(p))); DisplayDeltaMassPeak.FormatPeakListGridView(dgv_ET_Peak_List, false); }
private void tb_modTableFilter_TextChanged(object sender, EventArgs e) { IEnumerable <object> selected_unmods = tb_modTableFilter.Text == "" ? Sweet.lollipop.theoretical_database.unlocalized_lookup.Values : ExtensionMethods.filter(Sweet.lollipop.theoretical_database.unlocalized_lookup.Values, tb_modTableFilter.Text); DisplayUtility.FillDataGridView(dgv_unlocalizedModifications, selected_unmods.OfType <UnlocalizedModification>().Select(u => new DisplayUnlocalizedModification(u))); DisplayUnlocalizedModification.FormatUnlocalizedModificationTable(dgv_unlocalizedModifications); }
public void FillTablesAndCharts() { plotObservedVsExpectedRelativeDifference(); DisplayUtility.FillDataGridView(dgv_quantification_results, SaveState.lollipop.qVals.Select(q => new DisplayQuantitativeValues(q))); DisplayQuantitativeValues.FormatGridView(dgv_quantification_results); volcanoPlot(); plotBiorepIntensities(); updateGoTermsTable(); }