public List <DataTable> SetTables()
{
DataTables = new List <DataTable>
{
DisplayTopDownProteoform.FormatTopDownTable(Sweet.lollipop.topdown_proteoforms.Select(e => new DisplayTopDownProteoform(e)).ToList(), "TopdownProteoforms", false)
};
return(DataTables);
}
private void tb_tableFilter_TextChanged(object sender, EventArgs e)
{
IEnumerable <object> selected_td = tb_tableFilter.Text == "" ?
Sweet.lollipop.topdown_proteoforms :
ExtensionMethods.filter(Sweet.lollipop.topdown_proteoforms, tb_tableFilter.Text);
DisplayUtility.FillDataGridView(dgv_TD_proteoforms, selected_td.OfType <TopDownProteoform>().Select(t => new DisplayTopDownProteoform(t)));
DisplayTopDownProteoform.FormatTopDownTable(dgv_TD_proteoforms, false);
}
public List <DataTable> SetTables()
{
DataTables = new List <DataTable>
{
DisplayTopDownProteoform.FormatTopDownTable(Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(e => e.topdown_id && e.linked_proteoform_references != null)).Select(e => new DisplayTopDownProteoform(e as TopDownProteoform)).ToList(), "TopdownProteoforms", true),
DisplayExperimentalProteoform.FormatAggregatesTable(Sweet.lollipop.target_proteoform_community.experimental_proteoforms.Where(e => !e.topdown_id && e.linked_proteoform_references != null && (Sweet.lollipop.count_adducts_as_identifications || !e.adduct)).Select(e => new DisplayExperimentalProteoform(e)).ToList(), "IdentifiedExperimentals")
};
return(DataTables);
}
public void FillTablesAndCharts()
{
DisplayUtility.FillDataGridView(dgv_TD_proteoforms, Sweet.lollipop.topdown_proteoforms.Select(t => new DisplayTopDownProteoform(t)));
DisplayTopDownProteoform.FormatTopDownTable(dgv_TD_proteoforms, false);
load_colors();
mods = Sweet.lollipop.topdown_proteoforms.SelectMany(p => p.topdown_ptm_set.ptm_combination).Select(m => m.modification.OriginalId).Distinct().ToList();
tb_tdProteoforms.Text = Sweet.lollipop.topdown_proteoforms.Count(td => td.accepted).ToString();
tb_td_hits.Text = Sweet.lollipop.top_down_hits.Count.ToString();
tb_unique_PFRs.Text = Sweet.lollipop.topdown_proteoforms.Where(td => td.accepted).Select(p => p.pfr_accession).Distinct().Count().ToString();
}
public void FillTablesAndCharts()
{
DisplayUtility.FillDataGridView(dgv_identified_experimentals, Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms)
.Where(e => !e.topdown_id && e.linked_proteoform_references != null && (Sweet.lollipop.count_adducts_as_identifications || !e.adduct)).Select(e => new DisplayExperimentalProteoform(e)));
DisplayExperimentalProteoform.FormatAggregatesTable(dgv_identified_experimentals);
DisplayUtility.FillDataGridView(dgv_td_proteoforms, Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(e => e.topdown_id && e.linked_proteoform_references != null)).Select(e => new DisplayTopDownProteoform(e as TopDownProteoform)));
DisplayTopDownProteoform.FormatTopDownTable(dgv_td_proteoforms, true);
tb_not_td.Text = "Identified Experimental Proteoforms Not in Top-Down";
tb_topdown.Text = "Top-Down Proteoforms";
}
private void tb_tableFilter_TextChanged(object sender, EventArgs e)
{
IEnumerable <object> filter_experimentals = tb_tableFilter.Text == "" ?
Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(p => !p.topdown_id && p.linked_proteoform_references != null && (Sweet.lollipop.count_adducts_as_identifications || !p.adduct))).Select(ep => new DisplayExperimentalProteoform(ep)) :
ExtensionMethods.filter(Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(p => !p.topdown_id && p.linked_proteoform_references != null)).Select(ep => new DisplayExperimentalProteoform(ep)), tb_tableFilter.Text);
DisplayUtility.FillDataGridView(dgv_identified_experimentals, filter_experimentals);
DisplayExperimentalProteoform.FormatAggregatesTable(dgv_identified_experimentals);
IEnumerable <object> filter_topdown = tb_tableFilter.Text == "" ?
Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(p => p.topdown_id && p.linked_proteoform_references != null)).Select(p => new DisplayTopDownProteoform(p as TopDownProteoform)) :
ExtensionMethods.filter(Sweet.lollipop.target_proteoform_community.families.SelectMany(f => f.experimental_proteoforms.Where(p => p.topdown_id && p.linked_proteoform_references != null)).Select(p => new DisplayTopDownProteoform(p as TopDownProteoform)), tb_tableFilter.Text);
DisplayUtility.FillDataGridView(dgv_td_proteoforms, filter_topdown);
DisplayTopDownProteoform.FormatTopDownTable(dgv_td_proteoforms, true);
}
private void display_family_members(int row_index, int column_index)
{
ProteoformFamily selected_family = (ProteoformFamily)((DisplayObject)this.dgv_main.Rows[row_index].DataBoundItem).display_object;
if (column_index < 0)
{
return;
}
if (new List <string> {
nameof(DisplayProteoformFamily.theoretical_count), nameof(DisplayProteoformFamily.accession_list), nameof(DisplayProteoformFamily.name_list)
}.Contains(dgv_main.Columns[column_index].Name))
{
if (selected_family.theoretical_proteoforms.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_proteoform_family_members, selected_family.theoretical_proteoforms.Select(t => new DisplayTheoreticalProteoform(t)));
DisplayTheoreticalProteoform.FormatTheoreticalProteoformTable(dgv_proteoform_family_members);
}
else
{
dgv_proteoform_family_members.Rows.Clear();
}
}
else if (new List <string> {
nameof(DisplayProteoformFamily.experimental_count), nameof(DisplayProteoformFamily.experimentals_list), nameof(DisplayProteoformFamily.agg_mass_list)
}.Contains(dgv_main.Columns[column_index].Name))
{
if (selected_family.experimental_proteoforms.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_proteoform_family_members, selected_family.experimental_proteoforms.Where(e => !e.topdown_id).Select(e => new DisplayExperimentalProteoform(e)));
DisplayExperimentalProteoform.FormatAggregatesTable(dgv_proteoform_family_members);
}
else
{
dgv_proteoform_family_members.Rows.Clear();
}
}
else if (new List <string> {
nameof(DisplayProteoformFamily.topdown_count)
}.Contains(dgv_main.Columns[column_index].Name))
{
if (selected_family.experimental_proteoforms.Count(p => p.topdown_id) > 0)
{
DisplayUtility.FillDataGridView(dgv_proteoform_family_members, selected_family.experimental_proteoforms.Where(p => p.topdown_id).Select(td => new DisplayTopDownProteoform(td as TopDownProteoform)));
DisplayTopDownProteoform.FormatTopDownTable(dgv_proteoform_family_members, false);
}
else
{
dgv_proteoform_family_members.Rows.Clear();
}
}
else if (dgv_main.Columns[column_index].Name == nameof(DisplayProteoformFamily.relation_count))
{
if (selected_family.relations.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_proteoform_family_members, selected_family.relations.Select(r => new DisplayProteoformRelation(r)));
DisplayProteoformRelation.FormatRelationsGridView(dgv_proteoform_family_members, false, false, false);
}
else
{
dgv_proteoform_family_members.Rows.Clear();
}
}
}