public DatabaseParam(Database[] databases)
: base(null)
{
_count = databases.Length;
Value = databases;
Default = databases;
}
public DatabasePanel(Database[] value)
{
_count = value.Length;
InitializeComponent();
Value = value;
}
public override void Clear()
{
Value = new Database[_count];
}
private static void ParseDatabase(StreamWriter writer, Database db, string status, int progress,
ProcessInfo processInfo)
{
if (db.File == null || !File.Exists(db.File)){
return;
}
StreamReader reader = new StreamReader(db.File);
string line;
Regex regex = new Regex(db.SearchExpression);
while ((line = reader.ReadLine()) != null){
if (line.StartsWith(">")){
string identifier = regex.Match(line).Groups[1].Value;
object[] items = new object[]{
db.File, db.Source, db.Species, db.Taxid, db.Version,
db.Prefix == null ? identifier : db.Prefix + identifier
};
lock (writer){
writer.WriteLine(StringUtils.Concat("\t", items));
}
}
}
reader.Close();
lock (processInfo){
processInfo.Progress(progress);
processInfo.Status(status);
}
}