public int GetNoiseLevelUsedForQScoring(BamFilterParameters bamFilterParameters) { return(ForcedNoiseLevel == -1 ? bamFilterParameters.MinimumBaseCallQuality : ForcedNoiseLevel); }
public static int GetNoiseLevelUsedForQScoring( VariantCallingParameters varCallingParameters, BamFilterParameters bamFilterParameters) { return(varCallingParameters.ForcedNoiseLevel == -1 ? bamFilterParameters.MinimumBaseCallQuality : varCallingParameters.ForcedNoiseLevel); }
public void SetDerivedParameters(BamFilterParameters bamFilterParameters) { NoiseLevelUsedForQScoring = GetNoiseLevelUsedForQScoring(bamFilterParameters); }