/// <summary> Constructs an EnzymeResidueLocator from an existing Atom.
///
/// </summary>
/// <param name="atom">Atom that should be converted into a EnzymeResidueLocator.
/// </param>
public EnzymeResidueLocator(Atom atom)
: base(atom)
{
if (atom is PseudoAtom)
{
this.Label = ((PseudoAtom)atom).Label;
}
}
/// <summary> Constructs a ring that will have a certain number of atoms of the given elements.
///
/// </summary>
/// <param name="ringSize"> The number of atoms and bonds the ring will have
/// </param>
/// <param name="elementSymbol"> The element of the atoms the ring will have
/// </param>
public Ring(int ringSize, System.String elementSymbol)
: this(ringSize)
{
base.atomCount = ringSize;
base.electronContainerCount = ringSize;
atoms_Renamed_Field[0] = new Atom(elementSymbol);
for (int i = 1; i < ringSize; i++)
{
atoms_Renamed_Field[i] = new Atom(elementSymbol);
base.electronContainers[i - 1] = new Bond(atoms_Renamed_Field[i - 1], atoms_Renamed_Field[i], 1);
}
base.electronContainers[ringSize - 1] = new Bond(atoms_Renamed_Field[ringSize - 1], atoms_Renamed_Field[0], 1);
}