/// <summary>Checks the sample for missing values.</summary>
/// <param name="sample">The sample.</param>
/// <param name="soil">The soil.</param>
private static void CheckSampleForMissingValues(Sample sample, Soil soil)
{
if (!MathUtilities.ValuesInArray(sample.SW))
{
sample.SW = null;
}
if (sample.NO3 != null && !MathUtilities.ValuesInArray(sample.NO3))
{
sample.NO3 = null;
}
if (sample.NH4 != null && !MathUtilities.ValuesInArray(sample.NH4))
{
sample.NH4 = null;
}
if (!MathUtilities.ValuesInArray(sample.CL))
{
sample.CL = null;
}
if (!MathUtilities.ValuesInArray(sample.EC))
{
sample.EC = null;
}
if (!MathUtilities.ValuesInArray(sample.ESP))
{
sample.ESP = null;
}
if (!MathUtilities.ValuesInArray(sample.PH))
{
sample.PH = null;
}
if (!MathUtilities.ValuesInArray(sample.OC))
{
sample.OC = null;
}
if (sample.SW != null)
{
sample.SW = MathUtilities.FixArrayLength(sample.SW, sample.Thickness.Length);
}
if (sample.CL != null)
{
sample.CL = MathUtilities.FixArrayLength(sample.CL, sample.Thickness.Length);
}
if (sample.EC != null)
{
sample.EC = MathUtilities.FixArrayLength(sample.EC, sample.Thickness.Length);
}
if (sample.ESP != null)
{
sample.ESP = MathUtilities.FixArrayLength(sample.ESP, sample.Thickness.Length);
}
if (sample.PH != null)
{
sample.PH = MathUtilities.FixArrayLength(sample.PH, sample.Thickness.Length);
}
if (sample.OC != null)
{
sample.OC = MathUtilities.FixArrayLength(sample.OC, sample.Thickness.Length);
}
var physical = soil.FindChild <Physical>();
if (physical != null)
{
double[] ll15 = Layers.LL15Mapped(physical, sample.Thickness);
for (int i = 0; i < sample.Thickness.Length; i++)
{
if (sample.SW != null && double.IsNaN(sample.SW[i]))
{
sample.SW[i] = ll15[i];
}
}
}
}
/// <summary>
/// Return a predicted SoilCrop for the specified crop name or null if not found.
/// </summary>
/// <param name="soil">The soil.</param>
/// <param name="CropName">Name of the crop.</param>
/// <returns></returns>
private static SoilCrop PredictedCrop(Soil soil, string CropName)
{
double[] A = null;
double B = double.NaN;
double[] KL = null;
if (soil.SoilType == null)
{
return(null);
}
if (soil.SoilType.Equals("Black Vertosol", StringComparison.CurrentCultureIgnoreCase))
{
if (CropName.Equals("Cotton", StringComparison.CurrentCultureIgnoreCase))
{
A = BlackVertosol.CottonA;
B = BlackVertosol.CottonB;
KL = CottonKL;
}
else if (CropName.Equals("Sorghum", StringComparison.CurrentCultureIgnoreCase))
{
A = BlackVertosol.SorghumA;
B = BlackVertosol.SorghumB;
KL = SorghumKL;
}
else if (CropName.Equals("Wheat", StringComparison.CurrentCultureIgnoreCase))
{
A = BlackVertosol.WheatA;
B = BlackVertosol.WheatB;
KL = WheatKL;
}
}
else if (soil.SoilType.Equals("Grey Vertosol", StringComparison.CurrentCultureIgnoreCase))
{
if (CropName.Equals("Cotton", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.CottonA;
B = GreyVertosol.CottonB;
KL = CottonKL;
}
else if (CropName.Equals("Sorghum", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.SorghumA;
B = GreyVertosol.SorghumB;
KL = SorghumKL;
}
else if (CropName.Equals("Wheat", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.WheatA;
B = GreyVertosol.WheatB;
KL = WheatKL;
}
else if (CropName.Equals("Barley", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.BarleyA;
B = GreyVertosol.BarleyB;
KL = BarleyKL;
}
else if (CropName.Equals("Chickpea", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.ChickpeaA;
B = GreyVertosol.ChickpeaB;
KL = ChickpeaKL;
}
else if (CropName.Equals("Fababean", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.FababeanA;
B = GreyVertosol.FababeanB;
KL = FababeanKL;
}
else if (CropName.Equals("Mungbean", StringComparison.CurrentCultureIgnoreCase))
{
A = GreyVertosol.MungbeanA;
B = GreyVertosol.MungbeanB;
KL = MungbeanKL;
}
}
if (A == null)
{
return(null);
}
var physical = soil.FindChild <IPhysical>();
double[] LL = PredictedLL(physical, A, B);
LL = Layers.MapConcentration(LL, PredictedThickness, physical.Thickness, LL.Last());
KL = Layers.MapConcentration(KL, PredictedThickness, physical.Thickness, KL.Last());
double[] XF = Layers.MapConcentration(PredictedXF, PredictedThickness, physical.Thickness, PredictedXF.Last());
string[] Metadata = StringUtilities.CreateStringArray("Estimated", physical.Thickness.Length);
return(new SoilCrop()
{
Name = CropName,
LL = LL,
LLMetadata = Metadata,
KL = KL,
KLMetadata = Metadata,
XF = XF,
XFMetadata = Metadata
});
}
/// <summary>Checks the sample for missing values.</summary>
/// <param name="sample">The sample.</param>
/// <param name="soil">The soil.</param>
private static void CheckSampleForMissingValues(Sample sample, Soil soil)
{
if (!MathUtilities.ValuesInArray(sample.SW))
{
sample.SW = null;
}
if (sample.NO3N != null && !MathUtilities.ValuesInArray(sample.NO3N))
{
sample.NO3N = null;
}
if (sample.NH4N != null && !MathUtilities.ValuesInArray(sample.NH4N))
{
sample.NH4N = null;
}
if (!MathUtilities.ValuesInArray(sample.CL))
{
sample.CL = null;
}
if (!MathUtilities.ValuesInArray(sample.EC))
{
sample.EC = null;
}
if (!MathUtilities.ValuesInArray(sample.ESP))
{
sample.ESP = null;
}
if (!MathUtilities.ValuesInArray(sample.PH))
{
sample.PH = null;
}
if (!MathUtilities.ValuesInArray(sample.OC))
{
sample.OC = null;
}
if (sample.SW != null)
{
sample.SW = MathUtilities.FixArrayLength(sample.SW, sample.Thickness.Length);
}
if (sample.CL != null)
{
sample.CL = MathUtilities.FixArrayLength(sample.CL, sample.Thickness.Length);
}
if (sample.EC != null)
{
sample.EC = MathUtilities.FixArrayLength(sample.EC, sample.Thickness.Length);
}
if (sample.ESP != null)
{
sample.ESP = MathUtilities.FixArrayLength(sample.ESP, sample.Thickness.Length);
}
if (sample.PH != null)
{
sample.PH = MathUtilities.FixArrayLength(sample.PH, sample.Thickness.Length);
}
if (sample.OC != null)
{
sample.OC = MathUtilities.FixArrayLength(sample.OC, sample.Thickness.Length);
}
var water = Apsim.Child(soil, typeof(Physical)) as Physical;
if (water != null)
{
double[] ll15 = Layers.LL15Mapped(soil, sample.Thickness);
for (int i = 0; i < sample.Thickness.Length; i++)
{
if (sample.SW != null && double.IsNaN(sample.SW[i]))
{
sample.SW[i] = ll15[i];
}
}
}
}
