private void applyBtn_Click(object sender, EventArgs e)
{
List<string> errors = new List<string>();
if (custom_trim.Checked)
{
if (String.IsNullOrWhiteSpace(f_adapter.Text))
{
errors.Add("Missing forward adapter");
}
if (String.IsNullOrWhiteSpace(r_adapter.Text))
{
errors.Add("Missing reverse adapter");
}
}
if (errors.Count > 0)
{
string err = string.Join("\r\n", errors.ToArray());
MessageBox.Show("There are errors in your config settings, please see details. \r\n\nDetails:\r\n\n" + err, "Minion - Important Message", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
errors.Clear();
}
else
{
//general
if (platform.SelectedIndex > -1)
{
Properties.Settings.Default.platform = platform.Text.ToString().ToLower();
}
if (chemistry.SelectedIndex > -1)
{
Properties.Settings.Default.chemistry = chemistry.Text.ToString().ToLower();
}
//alignment
if (aligner.SelectedIndex > -1)
{
Properties.Settings.Default.aligner = aligner.Text.ToString().ToLower();
}
Properties.Settings.Default.demultiplex = demultiplex.Checked;
Properties.Settings.Default.dual_index = dual_index.Checked;
Properties.Settings.Default.custom_trim = custom_trim.Checked;
Properties.Settings.Default.f_adapter = f_adapter.Text;
Properties.Settings.Default.r_adapter = r_adapter.Text;
//variant calling
if (variant_caller.SelectedIndex > -1)
{
Properties.Settings.Default.variant_caller = variant_caller.Text.ToString().ToLower();
}
Properties.Settings.Default.recalibrate = recalibrate.Checked;
Properties.Settings.Default.realign = realign.Checked;
//more
Properties.Settings.Default.tophat = rna_seq.Checked;
Properties.Settings.Default.tophat_fusion = fusion.Checked;
Properties.Settings.Default.cnvseq = cnv.Checked;
Properties.Settings.Default.breakdancer = translocations.Checked;
Properties.Settings.Default.pindel = indels.Checked;
workflow cf = new workflow();
cf.ShowDialog();
}
}
private void applyBtn_Click(object sender, EventArgs e)
{
List <string> errors = new List <string>();
if (custom_trim.Checked)
{
if (String.IsNullOrWhiteSpace(f_adapter.Text))
{
errors.Add("Missing forward adapter");
}
if (String.IsNullOrWhiteSpace(r_adapter.Text))
{
errors.Add("Missing reverse adapter");
}
}
if (errors.Count > 0)
{
string err = string.Join("\r\n", errors.ToArray());
MessageBox.Show("There are errors in your config settings, please see details. \r\n\nDetails:\r\n\n" + err, "Minion - Important Message", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
errors.Clear();
}
else
{
//general
if (platform.SelectedIndex > -1)
{
Properties.Settings.Default.platform = platform.Text.ToString().ToLower();
}
if (chemistry.SelectedIndex > -1)
{
Properties.Settings.Default.chemistry = chemistry.Text.ToString().ToLower();
}
//alignment
if (aligner.SelectedIndex > -1)
{
Properties.Settings.Default.aligner = aligner.Text.ToString().ToLower();
}
Properties.Settings.Default.demultiplex = demultiplex.Checked;
Properties.Settings.Default.dual_index = dual_index.Checked;
Properties.Settings.Default.custom_trim = custom_trim.Checked;
Properties.Settings.Default.f_adapter = f_adapter.Text;
Properties.Settings.Default.r_adapter = r_adapter.Text;
//variant calling
if (variant_caller.SelectedIndex > -1)
{
Properties.Settings.Default.variant_caller = variant_caller.Text.ToString().ToLower();
}
Properties.Settings.Default.recalibrate = recalibrate.Checked;
Properties.Settings.Default.realign = realign.Checked;
//more
Properties.Settings.Default.tophat = rna_seq.Checked;
Properties.Settings.Default.tophat_fusion = fusion.Checked;
Properties.Settings.Default.cnvseq = cnv.Checked;
Properties.Settings.Default.breakdancer = translocations.Checked;
Properties.Settings.Default.pindel = indels.Checked;
workflow cf = new workflow();
cf.ShowDialog();
}
}
