public void Start(string fileInput, string fileOutput, int timeLimit)
{
TwoSPInstance instance = new TwoSPInstance(fileInput);
// Setting the parameters of the GA for this instance of the problem.
int[] lowerBounds = new int[instance.NumberItems];
int[] upperBounds = new int[instance.NumberItems];
for (int i = 0; i < instance.NumberItems; i++) {
lowerBounds[i] = 0;
upperBounds[i] = instance.NumberItems - 1;
}
DiscreteGA genetic = new DiscreteGANPS42SP(instance, (int)popSize, mutProbability, lowerBounds, upperBounds);
// Solving the problem and writing the best solution found.
genetic.Run(timeLimit - (int)timePenalty);
int[,] coordinates = TwoSPUtils.NPSCoordinates(instance, genetic.BestIndividual);
TwoSPSolution solution = new TwoSPSolution(instance, coordinates);
solution.Write(fileOutput);
}