/// <summary>
/// Creates a new file that will be used to store an M-Maze behavior session
/// </summary>
/// <param name="rat_name">The rat name that is being run in the M-Maze</param>
public void CreateFile(string rat_name)
{
//If no rat name is defined, we will define a default name here
if (string.IsNullOrEmpty(rat_name))
{
rat_name = "_UNDEFINED_ANIMAL_NAME_";
}
//Figure out the path to the saved file
var path = MMazeConfiguration.GetInstance().SavePath;
var rat_path = rat_name + "/";
var fully_qualified_path = path + rat_path;
//Create the path if it does not already exist
Directory.CreateDirectory(fully_qualified_path);
//Create a file name for this new session
var file_time = DateTime.Now.ToFileTime();
string file_name = rat_name + "-" + file_time.ToString();
string file_name_with_extension = file_name + ".PTSD";
//Combine the path and file name to get a full path
string fully_qualified_path_and_file = path + rat_path + file_name_with_extension;
//Create the new handle to the new file
_writer = new StreamWriter(fully_qualified_path_and_file);
}
/// <summary>
/// Creates a new file that will be used to store an M-Maze behavior session
/// </summary>
/// <param name="rat_name">The rat name that is being run in the M-Maze</param>
public void CreateFile(string rat_name, int width, int height)
{
lock (_writer_object_lock)
{
//If no rat name is defined, we will define a default name here
if (string.IsNullOrEmpty(rat_name))
{
rat_name = "_UNDEFINED_ANIMAL_NAME_";
}
//Figure out the path to the saved file
var path = MMazeConfiguration.GetInstance().SavePath;
var rat_path = rat_name + "/videos/";
var fully_qualified_path = path + rat_path;
//Create the path if it does not already exist
Directory.CreateDirectory(fully_qualified_path);
//Create a file name for this new session
var file_time = DateTime.Now.ToFileTime();
string file_name = rat_name + "-" + file_time.ToString();
string file_name_with_extension = file_name + ".avi";
//Combine the path and file name to get a full path
string fully_qualified_path_and_file = path + rat_path + file_name_with_extension;
//Create the new handle to the new file
_writer = new Accord.Video.FFMPEG.VideoFileWriter();
_writer.Open(fully_qualified_path_and_file, width, height);
//Keep track of when the last frame was written to this video
//Initialize this to the current time for the new video being written.
_last_call = DateTime.Now;
}
}
/// <summary>
/// Constructor
/// </summary>
private MMazeBehaviorSession()
{
//Set the list of available stages.
//Stages should already be loaded in at this point in the program.
AvailableStages = MMazeConfiguration.GetInstance().LoadedStages;
if (AvailableStages.Count > 0)
{
CurrentStage = AvailableStages[0];
}
}
public MainWindow()
{
InitializeComponent();
//Load in the configuration file and the list of stages
MMazeConfiguration.GetInstance().LoadConfigurationFile();
MMazeConfiguration.GetInstance().LoadStages();
//Look for the camera in the list of available cameras
Accord.Video.DirectShow.FilterInfoCollection j = new Accord.Video.DirectShow.FilterInfoCollection(
Accord.Video.DirectShow.FilterCategory.VideoInputDevice);
List <Accord.Video.DirectShow.FilterInfo> my_list = j.Cast <Accord.Video.DirectShow.FilterInfo>().ToList();
Accord.Video.DirectShow.FilterInfo my_camera = my_list.Where(x => x.Name.Equals("HD USB Camera")).FirstOrDefault();
//Accord.Video.DirectShow.FilterInfo my_camera = my_list.Where(x => x.Name.Contains("Logitech")).FirstOrDefault();
if (my_camera != null)
{
//Set up the camera as the capture devices
var camera = new Accord.Video.DirectShow.VideoCaptureDevice(my_camera.MonikerString);
camera.NewFrame += Camera_NewFrame;
//Set camera properties
camera.SetCameraProperty(Accord.Video.DirectShow.CameraControlProperty.Exposure, -6, Accord.Video.DirectShow.CameraControlFlags.Manual);
//Select the proper video mode
for (int i = 0; i < camera.VideoCapabilities.Length; i++)
{
var selected_video_capabilities = camera.VideoCapabilities[i];
if (selected_video_capabilities.FrameSize.Width == _camera_frame_width && selected_video_capabilities.FrameSize.Height == _camera_frame_height)
{
camera.VideoResolution = selected_video_capabilities;
}
}
CameraVideoSourcePlayer.VideoSource = camera;
}
else
{
//Make sure the video source is null, indicating we do not have a camera connected
CameraVideoSourcePlayer.VideoSource = null;
}
//Set the data context for this window
//DataContext = new MMazeBehaviorViewModel(CameraVideoSourcePlayer);
DataContext = MMazeBehaviorViewModel.GetInstance();
MMazeBehaviorViewModel.GetInstance().SetupVideoSource(CameraVideoSourcePlayer);
//Start the camera
MMazeBehaviorViewModel vm = DataContext as MMazeBehaviorViewModel;
if (vm != null)
{
vm.StartCamera();
}
}
private void PlaySound()
{
//Reset the flag to play a sound
_playSoundFlag = false;
lock (sound_list_lock)
{
SoundList_TimeSinceSessionStart.Add(Convert.ToInt32(timer.Elapsed.TotalSeconds));
}
//Play the sound
if (CurrentStage.SoundFiles.Count > 0)
{
//Get the sound file name
var sound_file_name = CurrentStage.SoundFiles[0].Item1;
var sound_file_path = MMazeConfiguration.GetInstance().SoundPath_Base;
var fully_qualified_path = sound_file_path + sound_file_name;
//Write an event to the file indicating we are playing a sound at this time
MMazeEvent sound_event = new MMazeEvent(DateTime.Now, MMazeEventNames.SoundCue);
_session_file_writer.WriteEvent(sound_event, sound_file_name);
FileInfo finfo = new FileInfo(fully_qualified_path);
if (finfo.Exists)
{
//Set the variable in the model indicating that the sound is playing
IsSoundPlaying = true;
//Load the sound into memory
//SoundPlayer k = new SoundPlayer(finfo.FullName);
//Play the sound (asynchronously)
//k.Play();
//Play the sound
PlaySoundAsync(finfo.FullName);
}
}
//Restart timer 1
StartTimer1();
}
private void _background_thread_DoWork(object sender, DoWorkEventArgs e)
{
//If a stage has not been defined, return immediately. We cannot proceed.
if (CurrentStage == null)
{
return;
}
//Get an instance of the microcontroller that is connected to this computer
var microcontroller = Microcontroller.GetInstance();
microcontroller.ConnectToMicrocontroller();
//Initialize variables for this behavior session
LeftFeedCount = 0;
RightFeedCount = 0;
TrialState = MMazeTrialState.NoTrialStarted;
IsSoundPlaying = false;
//Open a file for this session
_session_file_writer = new MMazeFileWriter();
_session_file_writer.CreateFile(RatName);
_session_file_writer.WriteFileHeader(
RatName,
DateTime.Now.ToFileTime(),
CurrentStage.StageName,
MMazeConfiguration.GetInstance().BoothName
);
//Make hard copies of the timer lists for the current stage so we can use them this session
_this_session_timer_map = CurrentStage.StageRefractoryPeriods.ToList();
_this_session_max_timer_map = CurrentStage.StageMaxSoundDelays.ToList();
//Start a timer for the session.
timer.Restart();
//Start timer 1 - the refractory period timer
StartTimer1();
//Set the initial value of the "most recent feed" to be the current time
_most_recent_feed = DateTime.Now;
//Initialize the "feed lists"
FeedList_TimeSincePreviousFeed = new List <int>();
FeedList_TimeSinceSessionStart = new List <int>();
lock (sound_list_lock)
{
SoundList_TimeSinceSessionStart = new List <int>();
}
//Loop until the session is ended
while (!_background_thread.CancellationPending)
{
//Get the total seconds elapsed so far during this session
SecondsElapsed = Convert.ToInt32(timer.Elapsed.TotalSeconds);
//Read in the most recent event from the microcontroller
var latest_event = microcontroller.ReadStream();
if (latest_event != null && latest_event.EventType != MMazeEventNames.Undefined)
{
//Write the latest event to the file
_session_file_writer.WriteEvent(latest_event);
//If it was a feeder event, update the feed lists we are maintaining (which will also be used to update
//the plot)
if (latest_event.EventType == MMazeEventNames.LeftFeederTriggered ||
latest_event.EventType == MMazeEventNames.RightFeederTriggered)
{
var time_since_last_feed = DateTime.Now - _most_recent_feed;
_most_recent_feed = DateTime.Now;
switch (latest_event.EventType)
{
case MMazeEventNames.LeftFeederTriggered:
LeftFeedCount++;
break;
case MMazeEventNames.RightFeederTriggered:
RightFeedCount++;
break;
}
FeedList_TimeSincePreviousFeed.Add(Convert.ToInt32(time_since_last_feed.TotalSeconds));
FeedList_TimeSinceSessionStart.Add(Convert.ToInt32(timer.Elapsed.TotalSeconds));
_background_properties_to_update.Add("FeedList");
}
//Set the user-facing nosepoke and prox-sensor state variables based upon the most recent event
//that we have received from the microcontroller
switch (latest_event.EventType)
{
case MMazeEventNames.LeftNosepokeEnter:
LeftNosepokeState = true;
break;
case MMazeEventNames.LeftNosepokeLeave:
LeftNosepokeState = false;
break;
case MMazeEventNames.RightNosepokeEnter:
RightNosepokeState = true;
break;
case MMazeEventNames.RightNosepokeLeave:
RightNosepokeState = false;
break;
case MMazeEventNames.LeftProxEnter:
LeftProxState = true;
break;
case MMazeEventNames.LeftProxLeave:
LeftProxState = false;
break;
case MMazeEventNames.RightProxEnter:
RightProxState = true;
break;
case MMazeEventNames.RightProxLeave:
RightProxState = false;
break;
}
//Handle the trial state based upon the most recent event we received from the microcontroller
switch (TrialState)
{
case MMazeTrialState.NoTrialStarted:
//Set the trial state based upon the nosepoke that has been exited
if (latest_event.EventType == MMazeEventNames.LeftNosepokeLeave)
{
TrialState = MMazeTrialState.LeftToRight;
}
else if (latest_event.EventType == MMazeEventNames.RightNosepokeLeave)
{
TrialState = MMazeTrialState.RightToLeft;
}
break;
case MMazeTrialState.LeftToRight:
//This is a "left to right" trial, handle a beam break in the left prox area
if (latest_event.EventType == MMazeEventNames.LeftProxEnter)
{
TrialState = MMazeTrialState.LeftToRight_EnterLeftProx;
if (CurrentStage.StageCueType == MMazeStageCueType.ProximitySensor)
{
HandleBeamBreak();
}
}
break;
case MMazeTrialState.RightToLeft:
//This is a "right to left" trial, handle a beam break in the right prox area
if (latest_event.EventType == MMazeEventNames.RightProxEnter)
{
TrialState = MMazeTrialState.RightToLeft_EnterRightProx;
if (CurrentStage.StageCueType == MMazeStageCueType.ProximitySensor)
{
HandleBeamBreak();
}
}
break;
case MMazeTrialState.LeftToRight_EnterLeftProx:
//This is the end of a "left to right" trial, reset the trial state
if (latest_event.EventType == MMazeEventNames.RightNosepokeEnter)
{
TrialState = MMazeTrialState.NoTrialStarted;
if (CurrentStage.StageCueType == MMazeStageCueType.Nosepoke)
{
HandleBeamBreak();
}
}
break;
case MMazeTrialState.RightToLeft_EnterRightProx:
//This is the end of a "right to left" trial, reset the trial state
if (latest_event.EventType == MMazeEventNames.LeftNosepokeEnter)
{
TrialState = MMazeTrialState.NoTrialStarted;
if (CurrentStage.StageCueType == MMazeStageCueType.Nosepoke)
{
HandleBeamBreak();
}
}
break;
}
}
//Update the GUI based on what is happening in the background thread
_background_properties_to_update.Add("SoundList");
_background_thread.ReportProgress(0);
//Sleep the thread
Thread.Sleep(33);
}
//Close the file for this session
_session_file_writer.WriteFileFooter(DateTime.Now.ToFileTime());
_session_file_writer.CloseFile();
//Stop the session timer
timer.Stop();
//Stop the sound timers
if (_timer1 != null)
{
_timer1.Stop();
_timer1.Close();
}
if (_timer2 != null)
{
_timer2.Stop();
_timer2.Close();
}
//Close up
SecondsElapsed = 0;
_background_thread.ReportProgress(0);
//Report the thread being canceled
e.Cancel = true;
}