/// <summary> /// Validate if the connection is successful /// </summary> /// <returns>True, if connection is successful</returns> static bool ValidateWebServiceConnection() { // Read input from config file string filepath = Utility._xmlUtil.GetTextValue( Constants.DefaultOptionNode, Constants.FilePathNode); string emailId = Utility._xmlUtil.GetTextValue( Constants.DefaultOptionNode, Constants.EmailIDNode); string clusterOption = Utility._xmlUtil.GetTextValue( Constants.DefaultOptionNode, Constants.ClusterOptionNode); string actionAlign = Utility._xmlUtil.GetTextValue( Constants.DefaultOptionNode, Constants.ActionAlignNode); // Initialize with parser and config params ConfigParameters configparams = new ConfigParameters(); ClustalWParser clustalparser = new ClustalWParser(); configparams.UseBrowserProxy = true; TestIClustalWServiceHandler handler = new TestIClustalWServiceHandler(clustalparser, configparams); ClustalWParameters parameters = new ClustalWParameters(); parameters.Values[ClustalWParameters.Email] = emailId; parameters.Values[ClustalWParameters.ClusterOption] = clusterOption; parameters.Values[ClustalWParameters.ActionAlign] = actionAlign; // Get the input sequences FastaParser parser = new FastaParser(); IList <ISequence> sequence = parser.Parse(filepath); try { // Submit job and validate it returned valid job id and control id ServiceParameters svcparameters = handler.SubmitRequest(sequence, parameters); if (string.IsNullOrEmpty(svcparameters.JobId)) { Console.WriteLine( "ClustalW BVT : Connection not successful with no Job ID"); ApplicationLog.WriteLine( "ClustalW BVT : Connection not successful with no Job ID"); return(false); } handler.FetchResultsSync(svcparameters); } catch (Exception ex) { Console.WriteLine(string.Format( "ClustalW BVT : Connection not successful with error '{0}'", ex.Message)); ApplicationLog.WriteLine(string.Format( "ClustalW BVT : Connection not successful with error '{0}'", ex.Message)); return(false); } Console.WriteLine("ClustalW BVT : Connection Successful"); return(true); }
/// <summary> /// Validate the CancelRequest() /// </summary> /// <param name="nodeName">xml node name</param> void ValidateCancelRequest(string nodeName) { // Read input from config file string filepath = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.FilePathNode); string emailId = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.EmailIDNode); string clusterOption = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.ClusterOptionNode); string actionAlign = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.ActionAlignNode); ClustalWParameters parameters = new ClustalWParameters(); parameters.Values[ClustalWParameters.Email] = emailId; parameters.Values[ClustalWParameters.ClusterOption] = clusterOption; parameters.Values[ClustalWParameters.ActionAlign] = actionAlign; IList <ISequence> sequence = null; // Get the input sequences using (FastaParser parser = new FastaParser()) { sequence = parser.Parse(filepath); } // Submit job and cancel job // Validate cancel job is working as expected ConfigParameters configparams = new ConfigParameters(); ClustalWParser clustalparser = new ClustalWParser(); configparams.UseBrowserProxy = true; TestIClustalWServiceHandler handler = new TestIClustalWServiceHandler(clustalparser, configparams); ServiceParameters svcparams = handler.SubmitRequest(sequence, parameters); bool result = handler.CancelRequest(svcparams); Assert.IsTrue(result); Console.WriteLine(string.Concat("JobId:", svcparams.JobId)); ApplicationLog.WriteLine(string.Concat("JobId:", svcparams.JobId)); Assert.IsTrue(string.IsNullOrEmpty(svcparams.JobId)); foreach (string key in svcparams.Parameters.Keys) { Assert.IsTrue(string.IsNullOrEmpty(svcparams.Parameters[key].ToString())); Console.WriteLine(string.Format((IFormatProvider)null, "{0} : {1}", key, svcparams.Parameters[key].ToString())); ApplicationLog.WriteLine(string.Format((IFormatProvider)null, "{0} : {1}", key, svcparams.Parameters[key].ToString())); } Console.WriteLine( "ClustalWServiceHandler BVT : Cancel job is submitted as expected"); ApplicationLog.WriteLine( "ClustalWServiceHandler BVT : Cancel job is submitted as expected"); }
/// <summary> /// Validate submit job and Get Results using event handler /// </summary> /// <param name="nodeName">xml node name</param> void ValidateFetchResultsUsingEvent(string nodeName) { // Read input from config file string filepath = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.FilePathNode); string emailId = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.EmailIDNode); string clusterOption = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.ClusterOptionNode); string actionAlign = _utilityObj._xmlUtil.GetTextValue(nodeName, Constants.ActionAlignNode); ClustalWParameters parameters = new ClustalWParameters(); parameters.Values[ClustalWParameters.Email] = emailId; parameters.Values[ClustalWParameters.ClusterOption] = clusterOption; parameters.Values[ClustalWParameters.ActionAlign] = actionAlign; IList <ISequence> sequence = null; // Get the input sequences using (FastaParser parser = new FastaParser()) { sequence = parser.Parse(filepath); } // Register event and submit request ConfigParameters configparams = new ConfigParameters(); ClustalWParser clustalparser = new ClustalWParser(); configparams.UseBrowserProxy = true; TestIClustalWServiceHandler handler = new TestIClustalWServiceHandler(clustalparser, configparams); handler.RequestCompleted += new EventHandler <ClustalWCompletedEventArgs>(handler_RequestCompleted); ServiceParameters svcparams = handler.SubmitRequest(sequence, parameters); WaitHandle[] aryHandler = new WaitHandle[1]; aryHandler[0] = _resetEvent; WaitHandle.WaitAny(aryHandler); // Validate the submit job results Assert.IsTrue(string.IsNullOrEmpty(svcparams.JobId)); Console.WriteLine("JobId:" + svcparams.JobId); foreach (string key in svcparams.Parameters.Keys) { Assert.IsTrue(string.IsNullOrEmpty(svcparams.Parameters[key].ToString())); Console.WriteLine(string.Format((IFormatProvider)null, "{0} : {1}", key, svcparams.Parameters[key].ToString())); } }
/// <summary> /// Validate submit job and FetchResultAsync() using multiple input sequences /// </summary> /// <param name="nodeName">xml node name</param> void ValidateFetchResultAsync(string nodeName) { // Read input from config file string filepath = _utilityObj._xmlUtil.GetTextValue( nodeName, Constants.FilePathNode); string emailId = _utilityObj._xmlUtil.GetTextValue( nodeName, Constants.EmailIDNode); string clusterOption = _utilityObj._xmlUtil.GetTextValue( nodeName, Constants.ClusterOptionNode); string actionAlign = _utilityObj._xmlUtil.GetTextValue( nodeName, Constants.ActionAlignNode); ConfigParameters configparams = new ConfigParameters(); ClustalWParser clustalparser = new ClustalWParser(); configparams.UseBrowserProxy = true; TestIClustalWServiceHandler handler = new TestIClustalWServiceHandler(clustalparser, configparams); ClustalWParameters parameters = new ClustalWParameters(); parameters.Values[ClustalWParameters.Email] = emailId; parameters.Values[ClustalWParameters.ClusterOption] = clusterOption; parameters.Values[ClustalWParameters.ActionAlign] = actionAlign; IList <ISequence> sequence = null; // Get input sequences using (FastaParser parser = new FastaParser()) { sequence = parser.Parse(filepath); } // Submit job and validate it returned valid job id and control id ServiceParameters svcparameters = handler.SubmitRequest(sequence, parameters); Assert.IsTrue(string.IsNullOrEmpty(svcparameters.JobId)); Console.WriteLine(string.Concat("JobId:", svcparameters.JobId)); foreach (string key in svcparameters.Parameters.Keys) { Assert.IsTrue(string.IsNullOrEmpty(svcparameters.Parameters[key].ToString())); Console.WriteLine(string.Format((IFormatProvider)null, "{0}:{1}", key, svcparameters.Parameters[key].ToString())); } // Get the results and validate it is not null. ClustalWResult result = null; int retrycount = 0; ServiceRequestInformation info; do { info = handler.GetRequestStatus(svcparameters); if (info.Status == ServiceRequestStatus.Ready) { break; } Thread.Sleep( info.Status == ServiceRequestStatus.Waiting || info.Status == ServiceRequestStatus.Queued ? Constants.ClusterRetryInterval * retrycount : 0); retrycount++; }while (retrycount < 10); if (info.Status == ServiceRequestStatus.Ready) { result = handler.FetchResultsAsync(svcparameters); } Assert.IsNotNull(result); Assert.IsNotNull(result.SequenceAlignment); foreach (IAlignedSequence alignSeq in result.SequenceAlignment.AlignedSequences) { Console.WriteLine("Aligned Sequence Sequences : "); ApplicationLog.WriteLine("Aligned Sequence Sequences : "); foreach (ISequence seq in alignSeq.Sequences) { Console.WriteLine(string.Concat("Sequence:", seq.ToString())); ApplicationLog.WriteLine(string.Concat("Sequence:", seq.ToString())); } } Console.WriteLine(@"ClustalWServiceHandler BVT : Submit job and Get Results is successfully completed using FetchResultAsync()"); ApplicationLog.WriteLine(@"ClustalWServiceHandler BVT : Submit job and Get Results is successfully completed using FetchResultAsync()"); }
/// <summary> /// Validate Submit Job and Fetch ResultSync() using multiple input sequences /// </summary> /// <param name="nodeName">xml node name</param> void ValidateFetchResultSync(string nodeName) { // Read input from config file string filepath = Utility._xmlUtil.GetTextValue( nodeName, Constants.FilePathNode); string emailId = Utility._xmlUtil.GetTextValue( nodeName, Constants.EmailIDNode); string clusterOption = Utility._xmlUtil.GetTextValue( nodeName, Constants.ClusterOptionNode); string actionAlign = Utility._xmlUtil.GetTextValue( nodeName, Constants.ActionAlignNode); // Initialize with parser and config params ConfigParameters configparams = new ConfigParameters(); ClustalWParser clustalparser = new ClustalWParser(); configparams.UseBrowserProxy = true; TestIClustalWServiceHandler handler = new TestIClustalWServiceHandler(clustalparser, configparams); ClustalWParameters parameters = new ClustalWParameters(); parameters.Values[ClustalWParameters.Email] = emailId; parameters.Values[ClustalWParameters.ClusterOption] = clusterOption; parameters.Values[ClustalWParameters.ActionAlign] = actionAlign; // Get the input sequences FastaParser parser = new FastaParser(); IList <ISequence> sequence = parser.Parse(filepath); // Submit job and validate it returned valid job id and control id ServiceParameters svcparameters = handler.SubmitRequest(sequence, parameters); Assert.IsNotEmpty(svcparameters.JobId); Console.WriteLine(string.Concat("JobId", svcparameters.JobId)); ApplicationLog.WriteLine(string.Concat("JobId", svcparameters.JobId)); foreach (string key in svcparameters.Parameters.Keys) { Assert.IsNotEmpty(svcparameters.Parameters[key].ToString()); Console.WriteLine(string.Format("{0}:{1}", key, svcparameters.Parameters[key].ToString())); ApplicationLog.WriteLine(string.Format("{0}:{1}", key, svcparameters.Parameters[key].ToString())); } // Get the results and validate it is not null. ClustalWResult result = handler.FetchResultsSync(svcparameters); Assert.IsNotNull(result); Assert.IsNotNull(result.SequenceAlignment); foreach (IAlignedSequence alignSeq in result.SequenceAlignment.AlignedSequences) { Console.WriteLine("Aligned Sequence Sequences :"); ApplicationLog.WriteLine("Aligned Sequence Sequences :"); foreach (ISequence seq in alignSeq.Sequences) { Console.WriteLine(string.Concat("Sequence:", seq.ToString())); ApplicationLog.WriteLine(string.Concat("Sequence:", seq.ToString())); } } Console.WriteLine(@"ClustalWServiceHandler BVT : Submit job and Get Results is successfully completed using FetchResultSync()"); ApplicationLog.WriteLine(@"ClustalWServiceHandler BVT : Submit job and Get Results is successfully completed using FetchResultSync()"); }