public static int l_dnaChangeRefcount(this L_Dna da, int delta)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaChangeRefcount((HandleRef)da, delta));
}
public static int l_dnaSetParameters(this L_Dna da, double startx, double delx)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaSetParameters((HandleRef)da, startx, delx));
}
public static IntPtr l_dnaGetDArray(this L_Dna da, int copyflag)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaGetDArray((HandleRef)da, copyflag));
}
public static int l_dnaShiftValue(this L_Dna da, int index, double diff)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaShiftValue((HandleRef)da, index, diff));
}
public static int l_dnaGetIValue(this L_Dna da, int index, out int pival)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaGetIValue((HandleRef)da, index, out pival));
}
public static int l_dnaReplaceNumber(this L_Dna da, int index, double val)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaReplaceNumber((HandleRef)da, index, val));
}
public static int l_dnaEmpty(this L_Dna da)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaEmpty((HandleRef)da));
}
public static int l_dnaCopyParameters(this L_Dna dad, L_Dna das)
{
if (null == dad ||
null == das)
{
throw new ArgumentNullException("dad, das cannot be null");
}
return(Native.DllImports.l_dnaCopyParameters((HandleRef)dad, (HandleRef)das));
}
public static int l_dnaWriteStream(IntPtr fp, L_Dna da)
{
if (IntPtr.Zero == fp ||
null == da)
{
throw new ArgumentNullException("fp, da cannot be null");
}
return(Native.DllImports.l_dnaWriteStream(fp, (HandleRef)da));
}
public static int l_dnaaReplaceDna(this L_Dnaa daa, int index, L_Dna da)
{
if (null == daa ||
null == da)
{
throw new ArgumentNullException("daa, da cannot be null");
}
return(Native.DllImports.l_dnaaReplaceDna((HandleRef)daa, index, (HandleRef)da));
}
public static int l_dnaFindValByHash(this L_Dna da, L_DnaHash dahash, double val, out int pindex)
{
if (null == da ||
null == dahash)
{
throw new ArgumentNullException("da, dahash cannot be null");
}
return(Native.DllImports.l_dnaFindValByHash((HandleRef)da, (HandleRef)dahash, val, out pindex));
}
// Add Dna to Dnaa
public static int l_dnaaAddDna(this L_Dnaa daa, L_Dna da, int copyflag)
{
if (null == daa ||
null == da)
{
throw new ArgumentNullException("daa, da cannot be null");
}
return(Native.DllImports.l_dnaaAddDna((HandleRef)daa, (HandleRef)da, copyflag));
}
public static void l_dnaDestroy(this L_Dna pda)
{
if (null == pda)
{
throw new ArgumentNullException("pda cannot be null");
}
var pointer = (IntPtr)pda;
Native.DllImports.l_dnaDestroy(ref pointer);
}
public static int l_dnaWrite(string filename, L_Dna da)
{
if (string.IsNullOrWhiteSpace(filename))
{
throw new ArgumentNullException("filename cannot be null");
}
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
return(Native.DllImports.l_dnaWrite(filename, (HandleRef)da));
}
// Search
public static int l_byteaFindEachSequence(this L_Bytea ba, IntPtr sequence, int seqlen, out L_Dna pda)
{
if (null == ba ||
IntPtr.Zero == sequence)
{
throw new ArgumentNullException("ba1, sequence cannot be null");
}
IntPtr pdaPtr;
var result = Native.DllImports.l_byteaFindEachSequence((HandleRef)ba, sequence, seqlen, out pdaPtr);
pda = new L_Dna(pdaPtr);
return(result);
}
public static int l_dnaRemoveDupsByHash(this L_Dna das, out L_Dna pdad, out L_DnaHash pdahash)
{
if (null == das)
{
throw new ArgumentNullException("das cannot be null");
}
IntPtr pdadPtr, pdahashPtr;
var result = Native.DllImports.l_dnaRemoveDupsByHash((HandleRef)das, out pdadPtr, out pdahashPtr);
pdad = new L_Dna(pdadPtr);
pdahash = new L_DnaHash(pdahashPtr);
return(result);
}
// DnaHash: Operations on Dna
public static L_DnaHash l_dnaHashCreateFromDna(this L_Dna da)
{
if (null == da)
{
throw new ArgumentNullException("da cannot be null");
}
var pointer = Native.DllImports.l_dnaHashCreateFromDna((HandleRef)da);
if (IntPtr.Zero == pointer)
{
return(null);
}
else
{
return(new L_DnaHash(pointer));
}
}
public static L_Dna l_dnaIntersectionByHash(this L_Dna da1, L_Dna da2)
{
if (null == da1 ||
null == da2)
{
throw new ArgumentNullException("da1, da2 cannot be null");
}
var pointer = Native.DllImports.l_dnaIntersectionByHash((HandleRef)da1, (HandleRef)da2);
if (IntPtr.Zero == pointer)
{
return(null);
}
else
{
return(new L_Dna(pointer));
}
}
