//---------------------------------------------------------------------
/// <summary>
/// Initializes the instance and its associated site variables.
/// </summary>
protected void Initialize(ICore modelCore,
SeedingAlgorithms seedAlg)
{
Model.Core = modelCore;
SiteVars.Initialize();
Seeding.InitializeMaxSeedNeighborhood();
disturbedSites = new DisturbedSiteEnumerator(Model.Core.Landscape,
SiteVars.Disturbed);
SeedingAlgorithm algorithm;
switch (seedAlg)
{
case SeedingAlgorithms.NoDispersal:
algorithm = NoDispersal.Algorithm;
break;
case SeedingAlgorithms.UniversalDispersal:
algorithm = UniversalDispersal.Algorithm;
break;
case SeedingAlgorithms.WardSeedDispersal:
algorithm = WardSeedDispersal.Algorithm;
break;
default:
throw new ArgumentException(string.Format("Unknown seeding algorithm: {0}", seedAlg));
}
Reproduction.Initialize(algorithm);
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the instance and its associated site variables.
/// </summary>
protected void Initialize(PlugIns.ICore modelCore,
double[,] establishProbabilities,
SeedingAlgorithms seedAlg,
Reproduction.Delegates.AddNewCohort addNewCohort)
{
Model.Core = modelCore;
SiteVars.Initialize();
Seeding.InitializeMaxSeedNeighborhood();
disturbedSites = new DisturbedSiteEnumerator(Model.Core.Landscape,
SiteVars.Disturbed);
SeedingAlgorithm algorithm;
switch (seedAlg)
{
case SeedingAlgorithms.NoDispersal:
algorithm = NoDispersal.Algorithm;
break;
case SeedingAlgorithms.UniversalDispersal:
algorithm = UniversalDispersal.Algorithm;
break;
case SeedingAlgorithms.WardSeedDispersal:
algorithm = WardSeedDispersal.Algorithm;
break;
default:
throw new ArgumentException(string.Format("Unknown seeding algorithm: {0}", seedAlg));
}
Reproduction.Initialize(establishProbabilities, algorithm,
addNewCohort == null ? null : new Reproduction.Delegates.AddNewCohort(addNewCohort));
}
//---------------------------------------------------------------------
//public static void Initialize(double[,] establishProbabilities,
public static void Initialize(SeedingAlgorithm seedingAlgorithm,
Delegates.AddNewCohort addNewCohort)
{
// Reproduction.establishProbabilities = establishProbabilities;
seeding = new Seeding(seedingAlgorithm);
Reproduction.addNewCohort = addNewCohort;
SiteVars.Cohorts = Model.Core.GetSiteVar <SiteCohorts>("Succession.Cohorts");
speciesDataset = Model.Core.Species;
int speciesCount = speciesDataset.Count;
resprout = Model.Core.Landscape.NewSiteVar <BitArray>();
serotiny = Model.Core.Landscape.NewSiteVar <BitArray>();
noEstablish = Model.Core.Landscape.NewSiteVar <bool>();
foreach (ActiveSite site in Model.Core.Landscape.ActiveSites)
{
resprout[site] = new BitArray(speciesCount);
serotiny[site] = new BitArray(speciesCount);
}
noEstablish.ActiveSiteValues = false;
planting = new Planting();
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the instance and its associated site variables.
/// </summary>
protected void Initialize(ICore modelCore,
SeedingAlgorithms seedAlg)//,
//Reproduction.Delegates.AddNewCohort addNewCohort)
{
Model.Core = modelCore;
SiteVars.Initialize();
Seeding.InitializeMaxSeedNeighborhood();
disturbedSites = new DisturbedSiteEnumerator(Model.Core.Landscape,
SiteVars.Disturbed);
SeedingAlgorithm algorithm = SeedingAlgorithmsUtil.GetAlgorithm(seedAlg,
Timestep);
Reproduction.Initialize(algorithm);
}
//---------------------------------------------------------------------
public static void Initialize(SeedingAlgorithm seedingAlgorithm)
{
seeding = new Seeding(seedingAlgorithm);
speciesDataset = Model.Core.Species;
int speciesCount = speciesDataset.Count;
resprout = Model.Core.Landscape.NewSiteVar <BitArray>();
serotiny = Model.Core.Landscape.NewSiteVar <BitArray>();
noEstablish = Model.Core.Landscape.NewSiteVar <bool>();
foreach (ActiveSite site in Model.Core.Landscape.ActiveSites)
{
resprout[site] = new BitArray(speciesCount);
serotiny[site] = new BitArray(speciesCount);
}
noEstablish.ActiveSiteValues = false;
planting = new Planting();
}