//---------------------------------------------------------------------
/// <summary>
/// Initializes a new instance for a set of species cohorts.
/// </summary>
public OldToYoungIterator(SpeciesCohorts cohorts)
{
this.cohorts = cohorts;
this.nextIndex = 0;
this.currentCohortDied = false;
MoveNext();
}
//---------------------------------------------------------------------
/// <summary>
/// Creates a copy of a species' cohorts.
/// </summary>
public SpeciesCohorts Clone()
{
SpeciesCohorts clone = new SpeciesCohorts(this.species);
clone.cohortData = new List <CohortData>(this.cohortData);
clone.isMaturePresent = this.isMaturePresent;
return(clone);
}
public static void SpeciesSiteRD(Landis.Library.DensityCohorts.SpeciesCohorts speciesCohorts, ActiveSite site)
{
float siteRD = 0;
ISpeciesDensity speciesDensity = SpeciesParameters.SpeciesDensity.AllSpecies[speciesCohorts.Species.Index];
//foreach (Landis.Library.DensityCohorts.ICohort cohort in speciesCohorts)
for (int s = 0; s < speciesCohorts.Count; s++)
{
Landis.Library.DensityCohorts.ICohort cohort = speciesCohorts[s];
double tmp_term1 = Math.Pow((cohort.Diameter / 25.4), 1.605);
float tmp_term2 = 10000 / speciesDensity.MaxSDI;
int tmp_term3 = cohort.Treenumber;
double tmp = tmp_term1 * tmp_term2 * tmp_term3 / Math.Pow(EcoregionData.ModelCore.CellLength, 2);
siteRD += (float)tmp;
}
SiteVars.SiteRD[site] = siteRD;
//return siteRD;
}
public SiteCohorts(DateTime StartDate, ActiveSite site, Landis.Library.DensityCohorts.InitialCommunities.ICommunity initialCommunity, bool usingClimateLibrary, string SiteOutputName = null)
{
//Cohort.SetSiteAccessFunctions(this);
this.Ecoregion = EcoregionData.ModelCore.Ecoregion[site];
this.Site = site;
cohorts = new Dictionary <ISpecies, List <Cohort> >();
SpeciesEstablishedByPlant = new List <ISpecies>();
SpeciesEstablishedBySerotiny = new List <ISpecies>();
SpeciesEstablishedByResprout = new List <ISpecies>();
SpeciesEstablishedBySeed = new List <ISpecies>();
CohortsKilledBySuccession = new List <int>(new int[EcoregionData.ModelCore.Species.Count()]);
CohortsKilledByHarvest = new List <int>(new int[EcoregionData.ModelCore.Species.Count()]);
CohortsKilledByFire = new List <int>(new int[EcoregionData.ModelCore.Species.Count()]);
CohortsKilledByWind = new List <int>(new int[EcoregionData.ModelCore.Species.Count()]);
CohortsKilledByOther = new List <int>(new int[EcoregionData.ModelCore.Species.Count()]);
uint key = ComputeKey((ushort)initialCommunity.MapCode, EcoregionData.ModelCore.Ecoregion[site].MapCode);
if (initialSites.ContainsKey(key) && SiteOutputName == null)
{
foreach (ISpecies spc in initialSites[key].cohorts.Keys)
{
foreach (Cohort cohort in initialSites[key].cohorts[spc])
{
AddNewCohort(new Cohort(cohort));
}
}
}
else
{
if (initialSites.ContainsKey(key) == false)
{
initialSites.Add(key, this);
}
bool densityProvided = false;
foreach (Landis.Library.DensityCohorts.ISpeciesCohorts speciesCohorts in initialCommunity.Cohorts)
{
foreach (Landis.Library.DensityCohorts.ICohort cohort in speciesCohorts)
{
//FIXME
if (cohort.Treenumber > 0) // 0 Biomass indicates treenumber value was not read in
{
densityProvided = true;
break;
}
}
}
if (densityProvided)
{
foreach (Landis.Library.DensityCohorts.ISpeciesCohorts speciesCohorts in initialCommunity.Cohorts)
{
//foreach (Landis.Library.DensityCohorts.ICohort cohort in speciesCohorts)
int cohortIndex = 0;
foreach (Landis.Library.DensityCohorts.ICohort cohort in speciesCohorts)
{
AddNewCohort(new Cohort(cohort.Species, cohort.Age, cohort.Treenumber, SiteOutputName, (ushort)(StartDate.Year - cohort.Age), Ecoregion));
//AddNewCohort(new Cohort(SpeciesParameters.SpeciesDensity[cohort.Species], cohort.Age, cohort.Treenumber, SiteOutputName, (ushort)(StartDate.Year - cohort.Age), Ecoregion));
//ISpeciesDensity speciespnet = PlugIn.SpeciesDensity[cohort.Species];
//SpeciesCohorts spCo = (SpeciesCohorts)speciesCohorts;
//CohortData coData = spCo.cohortData[0];
//coData.Biomass = cohort.Biomass;
cohortIndex++;
}
// BRM - Add function to update biomass values ??
SpeciesCohorts spCo = (SpeciesCohorts)speciesCohorts;
spCo.UpdateDiameterAndBiomass(Ecoregion);
}
}
else
{
throw new System.Exception("Error in initial community data - cohort tree numbers must be provided");
}
}
}