//---------------------------------------------------------------------
public override void LoadParameters(string dataFile, ICore mCore)
{
modelCore = mCore;
InputParametersParser.SpeciesDataset = modelCore.Species;
InputParametersParser parser = new InputParametersParser();
parameters = Landis.Data.Load <IInputParameters>(dataFile, parser);
foreach (ClimateVariableDefinition climateVarDfn in parameters.ClimateVars)
{
if (climateVarDfn.SourceName != "Library")
{
DataTable weatherTable = ClimateVariableDefinition.ReadWeatherFile(climateVarDfn.SourceName);
parameters.ClimateDataTable = weatherTable;
}
}
}
//---------------------------------------------------------------------
protected override IInputParameters Parse()
{
ReadLandisDataVar();
InputParameters parameters = new InputParameters(SpeciesDataset.Count);
InputVar <int> timestep = new InputVar <int>("Timestep");
ReadVar(timestep);
parameters.Timestep = timestep.Value;
const string LocalVariables = "LocalVariables";
const string DerivedLocalVariables = "DerivedLocalVariables";
const string NeighborhoodVariables = "NeighborhoodVariables";
const string ClimateVariables = "ClimateVariables";
const string DistanceVariables = "DistanceVariables";
const string SpeciesModels = "SpeciesModels";
const string LocalVarMapFileNames = "LocalVarMapFileNames";
const string NeighborVarMapFileNames = "NeighborVarMapFileNames";
const string ClimateVarMapFileNames = "ClimateVarMapFileNames";
const string DistanceVarMapFileNames = "DistanceVarMapFileNames";
const string SpeciesMapFileName = "SpeciesMapFileNames";
const string LogFile = "LogFile";
const string SpeciesLogFileNames = "SpeciesLogFileNames";
List <string> keywordList = new List <string> {
LocalVariables, DerivedLocalVariables, NeighborhoodVariables, ClimateVariables, DistanceVariables, SpeciesModels, LocalVarMapFileNames, NeighborVarMapFileNames, ClimateVarMapFileNames, DistanceVarMapFileNames, SpeciesMapFileName, LogFile, SpeciesLogFileNames
};
if (ReadOptionalName(LocalVariables))
{
InputVar <string> speciesName = new InputVar <string>("Species");
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
InputVar <string> mapName = new InputVar <string>("Map Name");
InputVar <string> forestType = new InputVar <string>("Forest Type");
InputVar <string> ageKeyword = new InputVar <string>("Age Keyword");
InputVar <int> minAge = new InputVar <int>("Min Age");
InputVar <int> maxAge = new InputVar <int>("Max Age");
lineNumbers.Clear();
Dictionary <string, int> forestTypeLineNumbers = new Dictionary <string, int>();
const string nameDelimiter = "->"; // delimiter that separates map name and forest type
IMapDefinition mapDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
// If the current line has the delimiter, then read the map
// name.
if (CurrentLine.Contains(nameDelimiter))
{
ReadValue(mapName, currentLine);
CheckForRepeatedName(mapName.Value, "map name", lineNumbers);
mapDefn = new MapDefinition();
mapDefn.Name = mapName.Value;
parameters.ReclassMaps.Add(mapDefn);
TextReader.SkipWhitespace(currentLine);
string word = TextReader.ReadWord(currentLine);
if (word != nameDelimiter)
{
throw NewParseException("Expected \"{0}\" after the map name {1}.",
nameDelimiter, mapName.Value.String);
}
forestTypeLineNumbers.Clear();
}
else
{
// If there is no name delimiter and we don't have the
// name for the first map yet, then it's an error.
if (mapDefn == null)
{
throw NewParseException("Expected a line with map name followed by \"{0}\"", nameDelimiter);
}
}
ReadValue(forestType, currentLine);
CheckForRepeatedName(forestType.Value, "forest type",
forestTypeLineNumbers);
IForestType currentForestType = new ForestType(SpeciesDataset.Count);
currentForestType.Name = forestType.Value;
mapDefn.ForestTypes.Add(currentForestType);
// Read the age ranges for the species:
ReadValue(ageKeyword, currentLine);
if (ageKeyword.Value == "All")
{
currentForestType.MinAge = 0;
int maxAgeAllSpecies = 0;
foreach (ISpecies species in PlugIn.ModelCore.Species)
{
if (species.Longevity > maxAgeAllSpecies)
{
maxAgeAllSpecies = species.Longevity;
}
}
currentForestType.MaxAge = maxAgeAllSpecies;
}
else
{
//ReadValue(minAge, currentLine);
currentForestType.MinAge = Convert.ToInt32(ageKeyword.Value);
TextReader.SkipWhitespace(currentLine);
string currentWord = TextReader.ReadWord(currentLine);
if (currentWord != "to")
{
StringBuilder message = new StringBuilder();
message.AppendFormat("Expected \"to\" after the minimum age ({0})",
minAge.Value.String);
if (currentWord.Length > 0)
{
message.AppendFormat(", but found \"{0}\" instead", currentWord);
}
throw NewParseException(message.ToString());
}
ReadValue(maxAge, currentLine);
currentForestType.MaxAge = maxAge.Value;
}
// Read species for forest types
List <string> speciesNames = new List <string>();
TextReader.SkipWhitespace(currentLine);
while (currentLine.Peek() != -1)
{
ReadValue(speciesName, currentLine);
string name = speciesName.Value.Actual;
bool negativeMultiplier = name.StartsWith("-");
if (negativeMultiplier)
{
name = name.Substring(1);
if (name.Length == 0)
{
throw new InputValueException(speciesName.Value.String,
"No species name after \"-\"");
}
}
if (name == "All")
{
foreach (ISpecies species in PlugIn.ModelCore.Species)
{
speciesNames.Add(species.Name);
currentForestType[species.Index] = 1;
}
}
else if (name == "None")
{
foreach (ISpecies species in PlugIn.ModelCore.Species)
{
speciesNames.Add(species.Name);
currentForestType[species.Index] = 0;
}
}
else
{
ISpecies species = GetSpecies(new InputValue <string>(name, speciesName.Value.String));
if (speciesNames.Contains(species.Name))
{
throw NewParseException("The species {0} appears more than once.", species.Name);
}
speciesNames.Add(species.Name);
currentForestType[species.Index] = negativeMultiplier ? -1 : 1;
}
TextReader.SkipWhitespace(currentLine);
}
if (speciesNames.Count == 0)
{
throw NewParseException("At least one species is required.");
}
GetNextLine();
}
}
if (ReadOptionalName(DerivedLocalVariables))
{
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
lineNumbers.Clear();
InputVar <string> derVarName = new InputVar <string>("Derived Variable Name");
InputVar <string> derVarFormula = new InputVar <string>("Derived Variable Formula");
const string nameDelimiter = "->"; // delimiter that separates map name and forest type
List <string> formulaSymbol = new List <string>(new string[] { "+", "-", "*" });
IVariableDefinition varDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(derVarName, currentLine);
CheckForRepeatedName(derVarName.Value, "var name", lineNumbers);
varDefn = new VariableDefinition();
varDefn.Name = derVarName.Value;
TextReader.SkipWhitespace(currentLine);
string word = TextReader.ReadWord(currentLine);
if (word != nameDelimiter)
{
throw NewParseException("Expected \"{0}\" after the map name {1}.",
nameDelimiter, derVarName.Value.String);
}
TextReader.SkipWhitespace(currentLine);
string variable = TextReader.ReadWord(currentLine);
varDefn.Variables.Add(variable);
while (currentLine.Peek() != -1)
{
TextReader.SkipWhitespace(currentLine);
string op = TextReader.ReadWord(currentLine);
if (op == "")
{
break;
}
varDefn.Operators.Add(op);
TextReader.SkipWhitespace(currentLine);
variable = TextReader.ReadWord(currentLine);
varDefn.Variables.Add(variable);
}
parameters.DerivedVars.Add(varDefn);
GetNextLine();
}
}
if (ReadOptionalName(NeighborhoodVariables))
{
// Read Neighborhood Variables
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
lineNumbers.Clear();
InputVar <string> neighborVarName = new InputVar <string>("Neighbor Variable Name");
InputVar <string> localVarName = new InputVar <string>("Local Variable Name");
InputVar <int> neighborRadius = new InputVar <int>("Neighbor Radius");
InputVar <string> transform = new InputVar <string>("Transform");
INeighborVariableDefinition neighborVarDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(neighborVarName, currentLine);
CheckForRepeatedName(neighborVarName.Value, "var name", lineNumbers);
neighborVarDefn = new NeighborVariableDefinition();
neighborVarDefn.Name = neighborVarName.Value;
ReadValue(localVarName, currentLine);
neighborVarDefn.LocalVariable = localVarName.Value;
ReadValue(neighborRadius, currentLine);
neighborVarDefn.NeighborRadius = neighborRadius.Value;
ReadValue(transform, currentLine);
neighborVarDefn.Transform = transform.Value;
parameters.NeighborVars.Add(neighborVarDefn);
GetNextLine();
}
}
if (ReadOptionalName(ClimateVariables))
{
// Read Climate Variables
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
lineNumbers.Clear();
InputVar <string> climateVarName = new InputVar <string>("Climate Variable Name");
InputVar <string> climateLibraryVarName = new InputVar <string>("Climate Library Variable Name");
InputVar <string> sourceName = new InputVar <string>("Source Name");
InputVar <string> varYear = new InputVar <string>("Variable Year");
InputVar <int> minMonth = new InputVar <int>("Min Month");
InputVar <int> maxMonth = new InputVar <int>("Max Month");
InputVar <string> transform = new InputVar <string>("Tranformation");
IClimateVariableDefinition climateVarDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(climateVarName, currentLine);
CheckForRepeatedName(climateVarName.Value, "var name", lineNumbers);
climateVarDefn = new ClimateVariableDefinition();
climateVarDefn.Name = climateVarName.Value;
ReadValue(varYear, currentLine);
climateVarDefn.Year = varYear.Value;
ReadValue(minMonth, currentLine);
climateVarDefn.MinMonth = minMonth.Value;
TextReader.SkipWhitespace(currentLine);
string currentWord = TextReader.ReadWord(currentLine);
if (currentWord != "to")
{
StringBuilder message = new StringBuilder();
message.AppendFormat("Expected \"to\" after the minimum month ({0})",
minMonth.Value.String);
if (currentWord.Length > 0)
{
message.AppendFormat(", but found \"{0}\" instead", currentWord);
}
throw NewParseException(message.ToString());
}
ReadValue(maxMonth, currentLine);
climateVarDefn.MaxMonth = maxMonth.Value;
ReadValue(sourceName, currentLine);
climateVarDefn.SourceName = sourceName.Value;
ReadValue(climateLibraryVarName, currentLine);
climateVarDefn.ClimateLibVariable = climateLibraryVarName.Value;
ReadValue(transform, currentLine);
climateVarDefn.Transform = transform.Value;
parameters.ClimateVars.Add(climateVarDefn);
GetNextLine();
}
}
if (ReadOptionalName(DistanceVariables))
{
// Read Distance Variables
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
lineNumbers.Clear();
InputVar <string> distanceVarName = new InputVar <string>("Distance Variable Name");
InputVar <string> localVarName = new InputVar <string>("Local Variable Name");
InputVar <string> transform = new InputVar <string>("Transform");
IDistanceVariableDefinition distanceVarDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(distanceVarName, currentLine);
CheckForRepeatedName(distanceVarName.Value, "var name", lineNumbers);
distanceVarDefn = new DistanceVariableDefinition();
distanceVarDefn.Name = distanceVarName.Value;
ReadValue(localVarName, currentLine);
distanceVarDefn.LocalVariable = localVarName.Value;
ReadValue(transform, currentLine);
distanceVarDefn.Transform = transform.Value;
parameters.DistanceVars.Add(distanceVarDefn);
GetNextLine();
}
}
// Read species models
ReadName(SpeciesModels);
InputVar <string> birdName = new InputVar <string>("Bird Name");
InputVar <string> parameter = new InputVar <string>("Parameter");
InputVar <string> paramType = new InputVar <string>("Parameter Type");
InputVar <double> paramValue = new InputVar <double>("Parameter Value");
Dictionary <string, int> speciesLineNumbers = new Dictionary <string, int>();
speciesLineNumbers.Clear();
const string speciesNameDelimiter = "->"; // delimiter that separates map name and forest type
IModelDefinition modelDefn = null;
while (!AtEndOfInput && !keywordList.Contains(CurrentName))
{
StringReader currentLine = new StringReader(CurrentLine);
// If the current line has the delimiter, then read the map
// name.
if (CurrentLine.Contains(speciesNameDelimiter))
{
ReadValue(birdName, currentLine);
CheckForRepeatedName(birdName.Value, "bird name", speciesLineNumbers);
modelDefn = new ModelDefinition();
modelDefn.Name = birdName.Value;
parameters.Models.Add(modelDefn);
TextReader.SkipWhitespace(currentLine);
string word = TextReader.ReadWord(currentLine);
if (word != speciesNameDelimiter)
{
throw NewParseException("Expected \"{0}\" after the map name {1}.",
speciesNameDelimiter, birdName.Value.String);
}
speciesLineNumbers.Clear();
}
else
{
// If there is no name delimiter and we don't have the
// name for the first map yet, then it's an error.
if (modelDefn == null)
{
throw NewParseException("Expected a line with map name followed by \"{0}\"", speciesNameDelimiter);
}
}
// Read the parameter name:
ReadValue(parameter, currentLine);
modelDefn.Parameters.Add(parameter.Value);
// Read the parameter types:
ReadValue(paramType, currentLine);
modelDefn.ParamTypes.Add(paramType.Value);
// Read the parameter value:
ReadValue(paramValue, currentLine);
modelDefn.Values.Add(paramValue.Value);
GetNextLine();
}
// Template for filenames of maps
InputVar <string> localVarMapFileNames = new InputVar <string>(LocalVarMapFileNames);
bool readLocalMaps = false;
if (ReadOptionalVar(localVarMapFileNames))
{
parameters.LocalVarMapFileNames = localVarMapFileNames.Value;
readLocalMaps = true;
}
InputVar <string> neighborMapFileNames = new InputVar <string>(NeighborVarMapFileNames);
bool readNeighborMaps = false;
if (ReadOptionalVar(neighborMapFileNames))
{
parameters.NeighborMapFileNames = neighborMapFileNames.Value;
readNeighborMaps = true;
}
InputVar <string> climateMapFileNames = new InputVar <string>(ClimateVarMapFileNames);
bool readClimateMaps = false;
if (ReadOptionalVar(climateMapFileNames))
{
parameters.ClimateMapFileNames = climateMapFileNames.Value;
readClimateMaps = true;
}
InputVar <string> distanceMapFileNames = new InputVar <string>(DistanceVarMapFileNames);
bool readDistanceMaps = false;
if (ReadOptionalVar(distanceMapFileNames))
{
parameters.DistanceMapFileNames = distanceMapFileNames.Value;
readDistanceMaps = true;
}
InputVar <string> speciesMapFileNames = new InputVar <string>(SpeciesMapFileName);
bool readSpeciesMaps = false;
if (ReadOptionalVar(speciesMapFileNames))
{
parameters.SpeciesMapFileNames = speciesMapFileNames.Value;
readSpeciesMaps = true;
}
InputVar <string> speciesLogFileNames = new InputVar <string>(SpeciesLogFileNames);
bool readSpeciesLogs = false;
if (ReadOptionalVar(speciesLogFileNames))
{
parameters.SpeciesLogFileNames = speciesLogFileNames.Value;
readSpeciesLogs = true;
}
InputVar <string> logFile = new InputVar <string>(LogFile);
bool readLogFile = false;
if (ReadOptionalVar(logFile))
{
parameters.LogFileName = logFile.Value;
readLogFile = true;
}
if (readLogFile)
{
CheckNoDataAfter(string.Format("the {0} parameter", LogFile));
}
else if (readSpeciesLogs)
{
CheckNoDataAfter(string.Format("the {0} parameter", SpeciesLogFileNames));
}
else if (readSpeciesMaps)
{
CheckNoDataAfter(string.Format("the {0} parameter", SpeciesMapFileName));
}
else if (readDistanceMaps)
{
CheckNoDataAfter(string.Format("the {0} parameter", DistanceVarMapFileNames));
}
else if (readClimateMaps)
{
CheckNoDataAfter(string.Format("the {0} parameter", ClimateVarMapFileNames));
}
else if (readNeighborMaps)
{
CheckNoDataAfter(string.Format("the {0} parameter", NeighborVarMapFileNames));
}
else if (readLocalMaps)
{
CheckNoDataAfter(string.Format("the {0} parameter", LocalVarMapFileNames));
}
else
{
CheckNoDataAfter(string.Format("the {0} parameter", SpeciesModels));
}
return(parameters); //.GetComplete();
}