//for cloning
public RegionStatistics(RegionStatistics regionStats)
{
AlignedBaseCount = regionStats.AlignedBaseCount;
BaseCount = regionStats.BaseCount;
Chromosome = regionStats.Chromosome;
ClustersPF = regionStats.ClustersPF;
ClustersRaw = regionStats.ClustersRaw;
Coverage = regionStats.Coverage;
CoverageByPosition = regionStats.CoverageByPosition;
EndPosition = regionStats.EndPosition;
ErrorCount = regionStats.ErrorCount;
ErrorRate = regionStats.ErrorRate;
Genome = regionStats.Genome;
Manifest = regionStats.Manifest;
NoCallCount = regionStats.NoCallCount;
NoCallRate = regionStats.NoCallRate;
ReadsBySample = regionStats.ReadsBySample;
RegionName = regionStats.RegionName;
StartPosition = regionStats.StartPosition;
VariantInfo = regionStats.VariantInfo;
}
public AmpliconStatistics(Dictionary<int, int> cyclesByRead)
{
int numberOfReads = cyclesByRead.Keys.Count;
ClustersRaw = new long[numberOfReads];
ClustersPF = new long[numberOfReads];
ErrorRate = new float[numberOfReads];
NoCallRate = new float[numberOfReads];
ErrorCount = new long[numberOfReads];
AlignedBaseCount = new long[numberOfReads];
NoCallCount = new long[numberOfReads];
BaseCount = new long[numberOfReads];
VariantInfo = new VariantsForSequence();
}
public RegionStatistics(Dictionary<int, int> cyclesByRead, string chromosome, string manifest, int genome,
string name, int start, int end)
{
Chromosome = chromosome;
Manifest = manifest;
StartPosition = start;
EndPosition = end;
RegionName = name;
Genome = genome;
int numberOfReads = cyclesByRead.Keys.Count;
ClustersRaw = new long[numberOfReads];
ClustersPF = new long[numberOfReads];
ErrorRate = new float[numberOfReads];
NoCallRate = new float[numberOfReads];
ErrorCount = new long[numberOfReads];
NoCallCount = new int[numberOfReads];
AlignedBaseCount = new long[numberOfReads];
BaseCount = new int[numberOfReads];
CoverageByPosition = new int[EndPosition - StartPosition + 1];
ReadsBySample = new Dictionary<string, int>();
VariantInfo = new VariantsForSequence();
}