public void ContainedBaseIsNotAddedToId()
{
var p = new Patient() { Id = "jaap" };
var o = new Observation() { Subject = new ResourceReference() { Reference = "#"+p.Id } };
o.Contained.Add(p);
o.ResourceBase = new Uri("http://nu.nl/fhir");
var xml = FhirSerializer.SerializeResourceToXml(o);
Assert.IsTrue(xml.Contains("value=\"#jaap\""));
var o2 = FhirParser.ParseFromXml(xml) as Observation;
o2.ResourceBase = new Uri("http://nu.nl/fhir");
xml = FhirSerializer.SerializeResourceToXml(o2);
Assert.IsTrue(xml.Contains("value=\"#jaap\""));
}
public Bundle SetBundleResult(OrderResponse orderResp, DiagnosticReport diagReport, Observation observ, Practitioner pract)
{
Bundle bundle = new Bundle();
bundle.Meta = new Meta() { Profile = new string[] { MetaBundleResult } };
bundle.Entry = new List<Bundle.BundleEntryComponent>();
if (orderResp != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = orderResp,
Transaction = new Bundle.BundleEntryTransactionComponent { Method = Bundle.HTTPVerb.POST, Url = "OrderResponse" }
};
bundle.Entry.Add(component);
}
if (diagReport != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = diagReport,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "DiagnosticReport" }
};
bundle.Entry.Add(component);
}
if (observ != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent()
{
Resource = observ,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Observation" }
};
bundle.Entry.Add(component);
}
//необязательный параметр
if (pract != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = pract,
Transaction = new Bundle.BundleEntryTransactionComponent { Method = Bundle.HTTPVerb.POST, Url = "Practitioner" }
};
bundle.Entry.Add(component);
}
return bundle;
}
/// <summary>
/// Generates an observation (BMI, Hemoglobin, Height or Weight)
/// </summary>
/// <param name="observationNumber"></param>
/// <param name="patient"></param>
/// <param name="encounter"></param>
/// <returns></returns>
public HL7.Observation GenerateObservation(int observationNumber, HL7.Patient patient, int encounter)
{
HL7.Observation genObs = new HL7.Observation();
//give an id
genObs.Id = observationNumber.ToString();
//status of the observation
genObs.Status = HL7.Observation.ObservationStatus.Final;
//add a code
int obsType = rand.Next(0, 3);
switch (obsType)
{
case 0:
genObs.Code = new HL7.CodeableConcept("http://loinc.org", "3141-9", "Body weight Measured");
genObs.Value = GenerateWeightValues();
break;
case 1:
genObs.Code = new HL7.CodeableConcept("http://loinc.org", "8302-2", "Body height");
genObs.Value = GenerateHeightValues();
break;
case 2:
genObs.Code = new HL7.CodeableConcept("http://loinc.org", "39156-5", "Body mass index (BMI) [Ratio]");
genObs.Value = GenerateBMIValues();
break;
case 3:
genObs.Code = new HL7.CodeableConcept("http://loinc.org", "718-7", "Hemoglobin [Mass/volume] in Blood");
genObs.Value = GenerateHemoValues();
break;
default:
break;
}
//add a patient reference
HL7.ResourceReference patRefence = new HL7.ResourceReference();
patRefence.ReferenceElement = new HL7.FhirString("Patient/" + Int32.Parse(patient.Id));
genObs.Subject = patRefence;
//add an encounter reference
HL7.ResourceReference encRefence = new HL7.ResourceReference();
encRefence.ReferenceElement = new HL7.FhirString("Encounter/" + encounter);
genObs.Encounter = encRefence;
//add observation date
genObs.Effective = new HL7.FhirDateTime(2015, 04, 1);
return(genObs);
}
public void ValidateResourceWithIncorrectChildElement()
{
FhirDateTime dt = new FhirDateTime();
dt.Value = "Ewout Kramer";
Observation o = new Observation { Applies = dt };
DiagnosticReport rep = new DiagnosticReport();
rep.Contained = new List<Resource> { o };
validateErrorOrFail(rep);
}
public static string ToValue(this FHIR.Observation observation)
{
if (observation.Value != null)
{
return(observation.Value.ToValue());
}
else if (observation.Component != null && observation.Component.Any())
{
return(string.Join(", ", observation.Component.Select(c => c.ToValue())));
}
else
{
throw new ArgumentException($"Unsupported FHIR observation value type.");
}
}
private Observation ConvertObservation(FHIR.Observation observation)
{
var result = new Observation
{
Id = observation.Id,
Text = observation.Code.Text
};
if (observation.Effective is FHIR.Period periodValue)
{
result.DateTime = periodValue.StartElement.ToDateTimeOffset();
}
else
{
throw new ArgumentException($"Unsupported FHIR date type {observation.Effective.GetType().Name}.");
}
result.Value = observation.ToValue();
return(result);
}
/// <summary>
/// Get patient data for ML task
/// </summary>
/// <param name="patient"> given patient </param>
/// <returns> a patient contains observation values for ML task </returns>
public static async Task <Models.Patient> GetDataForAnalysis(Models.Patient patient)
{
Models.Patient currentPatient = patient;
currentPatient.Observations = new List <Models.Observation>();
currentPatient.HasObservations = true;
try
{
var ObservationQuery = new SearchParams()
.Where("patient=" + currentPatient.Id)
.OrderBy("-date")
.LimitTo(LIMIT_ENTRY);
Bundle ObservationResult = await Client.SearchAsync <Hl7.Fhir.Model.Observation>(ObservationQuery);
foreach (var Entry in ObservationResult.Entry)
{
Hl7.Fhir.Model.Observation fhirObservation = (Hl7.Fhir.Model.Observation)Entry.Resource;
if (fhirObservation.Value != null && fhirObservation.Value is Hl7.Fhir.Model.Quantity)
{
ObservationMapper mapper = new ObservationMapper();
Models.Observation observation = mapper.Map(fhirObservation);
if (!currentPatient.ContainsObservation(observation.CodeText))
{
currentPatient.Observations.Add(observation);
}
}
}
}
catch (FhirOperationException FhirException)
{
System.Diagnostics.Debug.WriteLine("Fhir error message: " + FhirException.Message);
}
catch (Exception GeneralException)
{
System.Diagnostics.Debug.WriteLine("General error message: " + GeneralException.Message);
}
return(currentPatient);
}
/// <summary>
/// Get Observation values of a patients list (Total Cholesterol, Blood Pressure)
/// </summary>
/// <param name="patients"> given list of patients </param>
/// <returns> list of patients that contain Cholesterol and Blood Pressure values </returns>
public static async Task <PatientsList> GetObservationValues(PatientsList patients)
{
PatientsList MonitoredPatientList = new PatientsList();
foreach (Models.Patient MonitoredPatient in patients)
{
try
{
Models.Patient patient = MonitoredPatient;
patient.Observations = new List <Models.Observation>();
patient.HasObservations = true;
// sort by date, limit to 1 so only take the newest Cholesterol observation
var ObservationQuery = new SearchParams()
.Where("patient=" + MonitoredPatient.Id)
.Where("code=" + CHOLESTEROL_CODE)
.OrderBy("-date")
.LimitTo(1);
Bundle ObservationResult = await Client.SearchAsync <Hl7.Fhir.Model.Observation>(ObservationQuery);
if (ObservationResult.Entry.Count > 0)
{
// Map the FHIR Observation object to App's Observation object
Hl7.Fhir.Model.Observation fhirObservation = (Hl7.Fhir.Model.Observation)ObservationResult.Entry[0].Resource;
ObservationMapper mapper = new ObservationMapper();
Models.Observation cholesterolObservation = mapper.Map(fhirObservation);
patient.Observations.Add(cholesterolObservation);
}
// sort by date, limit to 5 so only take the lastest Blood Pressure observation
ObservationQuery = new SearchParams()
.Where("patient=" + MonitoredPatient.Id)
.Where("code=" + BLOOD_PRESSURE_CODE)
.OrderBy("-date")
.LimitTo(5);
ObservationResult = await Client.SearchAsync <Hl7.Fhir.Model.Observation>(ObservationQuery);
for (int i = 0; i < ObservationResult.Entry.Count; i++)
{
// Map the FHIR Observation object to App's Observation object
Hl7.Fhir.Model.Observation fhirObservation = (Hl7.Fhir.Model.Observation)ObservationResult.Entry[i].Resource;
ComponentObservationMapper mapper = new ComponentObservationMapper();
Models.Observation diastolicObservation = mapper.Map(fhirObservation.Component[0]);
diastolicObservation.Id = fhirObservation.Id;
Models.Observation systolicObservation = mapper.Map(fhirObservation.Component[1]);
systolicObservation.Id = fhirObservation.Id;
if (fhirObservation.Issued != null)
{
diastolicObservation.Issued = ((DateTimeOffset)fhirObservation.Issued).DateTime;
systolicObservation.Issued = ((DateTimeOffset)fhirObservation.Issued).DateTime;
}
else
{
diastolicObservation.Issued = null;
systolicObservation.Issued = null;
}
patient.Observations.Add(diastolicObservation);
patient.Observations.Add(systolicObservation);
}
MonitoredPatientList.AddPatient(patient);
}
catch (FhirOperationException FhirException)
{
System.Diagnostics.Debug.WriteLine("Fhir error message: " + FhirException.Message);
}
catch (Exception GeneralException)
{
System.Diagnostics.Debug.WriteLine("General error message: " + GeneralException.Message);
}
}
return(MonitoredPatientList);
}
public static void SerializeObservation(Hl7.Fhir.Model.Observation value, IFhirWriter writer, bool summary)
{
writer.WriteStartRootObject("Observation");
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element language
if (value.LanguageElement != null && !summary)
{
writer.WriteStartElement("language");
CodeSerializer.SerializeCode(value.LanguageElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element text
if (value.Text != null && !summary)
{
writer.WriteStartElement("text");
NarrativeSerializer.SerializeNarrative(value.Text, writer, summary);
writer.WriteEndElement();
}
// Serialize element contained
if (value.Contained != null && !summary && value.Contained.Count > 0)
{
writer.WriteStartArrayElement("contained");
foreach (var item in value.Contained)
{
writer.WriteStartArrayMember("contained");
FhirSerializer.SerializeResource(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element name
if (value.Name != null && !summary)
{
writer.WriteStartElement("name");
CodeableConceptSerializer.SerializeCodeableConcept(value.Name, writer, summary);
writer.WriteEndElement();
}
// Serialize element value
if (value.Value != null && !summary)
{
writer.WriteStartElement(SerializationUtil.BuildPolymorphicName("value", value.Value.GetType()));
FhirSerializer.SerializeElement(value.Value, writer, summary);
writer.WriteEndElement();
}
// Serialize element interpretation
if (value.Interpretation != null && !summary)
{
writer.WriteStartElement("interpretation");
CodeableConceptSerializer.SerializeCodeableConcept(value.Interpretation, writer, summary);
writer.WriteEndElement();
}
// Serialize element comments
if (value.CommentsElement != null && !summary)
{
writer.WriteStartElement("comments");
FhirStringSerializer.SerializeFhirString(value.CommentsElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element applies
if (value.Applies != null && !summary)
{
writer.WriteStartElement(SerializationUtil.BuildPolymorphicName("applies", value.Applies.GetType()));
FhirSerializer.SerializeElement(value.Applies, writer, summary);
writer.WriteEndElement();
}
// Serialize element issued
if (value.IssuedElement != null && !summary)
{
writer.WriteStartElement("issued");
InstantSerializer.SerializeInstant(value.IssuedElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element status
if (value.StatusElement != null && !summary)
{
writer.WriteStartElement("status");
CodeSerializer.SerializeCode <Hl7.Fhir.Model.ObservationStatus>(value.StatusElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element reliability
if (value.ReliabilityElement != null && !summary)
{
writer.WriteStartElement("reliability");
CodeSerializer.SerializeCode <Hl7.Fhir.Model.Observation.ObservationReliability>(value.ReliabilityElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element bodySite
if (value.BodySite != null && !summary)
{
writer.WriteStartElement("bodySite");
CodeableConceptSerializer.SerializeCodeableConcept(value.BodySite, writer, summary);
writer.WriteEndElement();
}
// Serialize element method
if (value.Method != null && !summary)
{
writer.WriteStartElement("method");
CodeableConceptSerializer.SerializeCodeableConcept(value.Method, writer, summary);
writer.WriteEndElement();
}
// Serialize element identifier
if (value.Identifier != null && !summary)
{
writer.WriteStartElement("identifier");
IdentifierSerializer.SerializeIdentifier(value.Identifier, writer, summary);
writer.WriteEndElement();
}
// Serialize element subject
if (value.Subject != null && !summary)
{
writer.WriteStartElement("subject");
ResourceReferenceSerializer.SerializeResourceReference(value.Subject, writer, summary);
writer.WriteEndElement();
}
// Serialize element performer
if (value.Performer != null && !summary)
{
writer.WriteStartElement("performer");
ResourceReferenceSerializer.SerializeResourceReference(value.Performer, writer, summary);
writer.WriteEndElement();
}
// Serialize element referenceRange
if (value.ReferenceRange != null && !summary && value.ReferenceRange.Count > 0)
{
writer.WriteStartArrayElement("referenceRange");
foreach (var item in value.ReferenceRange)
{
writer.WriteStartArrayMember("referenceRange");
ObservationSerializer.SerializeObservationReferenceRangeComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element component
if (value.Component != null && !summary && value.Component.Count > 0)
{
writer.WriteStartArrayElement("component");
foreach (var item in value.Component)
{
writer.WriteStartArrayMember("component");
ObservationSerializer.SerializeObservationComponentComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
writer.WriteEndComplexContent();
writer.WriteEndRootObject();
}
public virtual Model.Observation MergeObservation(ILookupTemplate <IFhirTemplate> config, Model.Observation observation, IObservationGroup grp)
{
return(_fhirTemplateProcessor.MergeObservation(config, grp, observation));
}
private string createObservation(decimal value)
{
Observation observation = new Observation();
observation.Status = Observation.ObservationStatus.Preliminary;
observation.Reliability = Observation.ObservationReliability.Questionable;
observation.Name = new CodeableConcept("http://loinc.org", "2164-2");
observation.Value = new Quantity() { System = new Uri("http://unitofmeasure.org"), Value = value, Units = "mmol" };
observation.BodySite = new CodeableConcept("http://snomed.info/sct", "182756003");
ResourceEntry<Observation> entry = client.Create<Observation>(observation, null, true);
return entry.GetBasicId();
}
public Bundle SetBundleOrder(Order order, DiagnosticOrder diagnosticOrder,
Specimen specimen, Encounter encounter, Condition condition,
Observation observation, Practitioner practitioner, Coverage coverage, Patient patient)
{
Bundle bundle = new Bundle();
bundle.Meta = new Meta() { Profile = new string[] { MetaBundleOrder } };
bundle.Entry = new List<Bundle.BundleEntryComponent>();
if (order != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = order,
Transaction = new Bundle.BundleEntryTransactionComponent { Method = Bundle.HTTPVerb.POST, Url = "Order" }
};
bundle.Entry.Add(component);
}
if (diagnosticOrder != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = diagnosticOrder,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "DiagnosticOrder" }
};
bundle.Entry.Add(component);
}
if (specimen != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = specimen,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Specimen" }
};
bundle.Entry.Add(component);
}
if (encounter != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = encounter,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Encounter" }
};
bundle.Entry.Add(component);
}
if (condition != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = condition,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Condition" }
};
bundle.Entry.Add(component);
}
if (observation != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = observation,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Observation" }
};
bundle.Entry.Add(component);
}
if (practitioner != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = practitioner,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Practitioner" }
};
bundle.Entry.Add(component);
}
if (coverage != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = coverage,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Coverage" }
};
bundle.Entry.Add(component);
}
if (patient != null)
{
Bundle.BundleEntryComponent component = new Bundle.BundleEntryComponent
{
Resource = patient,
Transaction = new Bundle.BundleEntryTransactionComponent() { Method = Bundle.HTTPVerb.POST, Url = "Patient" }
};
bundle.Entry.Add(component);
}
return bundle;
}
public void TestDecimalPrecisionSerializationInJson()
{
var dec6 = 6m;
var dec60 = 6.0m;
var obs = new Observation { Value = new FhirDecimal(dec6) };
var json = FhirSerializer.SerializeResourceToJson(obs);
var obs2 = (Observation)FhirParser.ParseFromJson(json);
Assert.AreEqual("6", ((FhirDecimal)obs2.Value).Value.Value.ToString(CultureInfo.InvariantCulture));
obs = new Observation { Value = new FhirDecimal(dec60) };
json = FhirSerializer.SerializeResourceToJson(obs);
obs2 = (Observation)FhirParser.ParseFromJson(json);
Assert.AreEqual("6.0", ((FhirDecimal)obs2.Value).Value.Value.ToString(CultureInfo.InvariantCulture));
}
/// <summary>
/// Generate data to supplement server data
/// </summary>
/// <returns></returns>
public CreatedDataContainer CreateData()
{
//read the state data
DataTable stateData = ReadStateData();
DataTable states = stateData.DefaultView.ToTable(true, "State");
//parameters for the size of the generated data set
int maxPerState = 10;
int minPerState = 10;
int maxObsPerPatient = 5;
int minObsPerPatien = 1;
int maxCondPerPatient = 1;
double conditionProb = 0.15;
//set the starting patient number
int patientNumber = 100000;
int observationNumber = 100000;
int conditionNumber = 100000;
//lists to store the generated data
List <HL7.Patient> patList = new List <HL7.Patient>();
List <HL7.Observation> obsList = new List <HL7.Observation>();
List <HL7.Condition> condList = new List <HL7.Condition>();
//do patient generation per state
foreach (DataRow state in states.Rows)
{
//get the countys for the given state
List <DataRow> counties =
(from county in stateData.AsEnumerable()
where county.Field <string>("State").Equals(state.Field <string>("State"))
select county).ToList <DataRow>();
//randomly determine the number of patients per state
int patientCount = Convert.ToInt32(Math.Round(rand.NextDouble() * (maxPerState - minPerState))) + minPerState;
for (int i = 0; i < patientCount; i++)
{
//generate a practitioner id
//currently using IDs 1 - 5
int practId = rand.Next(1, 5);
//select a county
DataRow thisCounty = counties[rand.Next(counties.Count())];
//generate the new patient
HL7.Patient thisPatient = GeneratePatient(patientNumber, practId, thisCounty["State"].ToString(), thisCounty["County"].ToString(), thisCounty["Postal Code"].ToString());
//add to the list
patList.Add(thisPatient);
patientNumber++;
}
}
//generate observations for each patient
foreach (var patient in patList)
{
int obsCount = rand.Next(0, maxObsPerPatient);
for (int i = 0; i < obsCount; i++)
{
HL7.Observation thisObservation = GenerateObservation(observationNumber, patient, i);
obsList.Add(thisObservation);
observationNumber++;
}
}
//generate conditions for each patient
foreach (var patient in patList)
{
double condPct = rand.NextDouble();
if (condPct < conditionProb)
{
HL7.Condition thisCondition = GenerateCondition(conditionNumber, patient);
condList.Add(thisCondition);
conditionNumber++;
}
}
return(new CreatedDataContainer(patList, condList, obsList));
}
//Test for github issue https://github.com/ewoutkramer/fhir-net-api/issues/145
public void Create_ObservationWithValueAsSimpleQuantity_ReadReturnsValueAsQuantity()
{
FhirClient client = new FhirClient(testEndpoint);
var observation = new Observation();
observation.Status = Observation.ObservationStatus.Preliminary;
observation.Code = new CodeableConcept("http://loinc.org", "2164-2");
observation.Value = new SimpleQuantity()
{
System = "http://unitsofmeasure.org",
Value = 23,
Code = "mg",
Unit = "miligram"
};
observation.BodySite = new CodeableConcept("http://snomed.info/sct", "182756003");
var fe = client.Create(observation);
fe = client.Read<Observation>(fe.ResourceIdentity().WithoutVersion());
Assert.IsInstanceOfType(fe.Value, typeof(Quantity));
}
public void ValidateResourceWithIncorrectElement()
{
FhirDateTime dt = new FhirDateTime();
dt.Value = "Ewout Kramer";
Observation o = new Observation { Applies = dt };
DiagnosticReport rep = new DiagnosticReport();
rep.Contained = new List<Resource> { o };
var errors = dt.Validate();
Assert.IsTrue(errors.Count == 1);
}
private void button1_Click_2(object sender, EventArgs e)
{
var endpoint = new Uri("http://fhirtest.uhn.ca/baseDstu2");
var client = new FhirClient(endpoint);
// Create new value for observation
SampledData val = new SampledData();
CodeableConcept concept = new CodeableConcept();
concept.Coding = new List<Coding>();
if (conversionList.Text.Equals("age"))
{
val.Data = CurrentMeasurement.age.ToString();
Coding code = new Coding();
code.Code = "410668003";
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("bmr"))
{
val.Data = CurrentMeasurement.bmr.ToString();
Coding code = new Coding();
code.Code = "60621009";
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("height"))
{
val.Data = CurrentMeasurement.height.ToString();
Coding code = new Coding();
code.Code = "60621009"; //SNOMED CT code
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("m_active_time")) val.Data = CurrentMeasurement.m_active_time.ToString();
else if (conversionList.Text.Equals("m_calories")) val.Data = CurrentMeasurement.m_calories.ToString();
else if (conversionList.Text.Equals("m_distance")) val.Data = CurrentMeasurement.m_distance.ToString();
else if (conversionList.Text.Equals("m_inactive_time")) val.Data = CurrentMeasurement.m_inactive_time.ToString();
else if (conversionList.Text.Equals("m_lcat")) val.Data = CurrentMeasurement.m_lcat.ToString();
else if (conversionList.Text.Equals("m_lcit")) val.Data = CurrentMeasurement.m_lcit.ToString();
else if (conversionList.Text.Equals("m_steps")) val.Data = CurrentMeasurement.m_steps.ToString();
else if (conversionList.Text.Equals("m_total_calories")) val.Data = CurrentMeasurement.m_total_calories.ToString();
else if (conversionList.Text.Equals("s_asleep_time")) val.Data = CurrentMeasurement.s_asleep_time.ToString();
else if (conversionList.Text.Equals("s_awake")) val.Data = CurrentMeasurement.s_awake.ToString();
else if (conversionList.Text.Equals("s_awake_time")) val.Data = CurrentMeasurement.s_awake_time.ToString();
else if (conversionList.Text.Equals("s_awakenings")) val.Data = CurrentMeasurement.s_awakenings.ToString();
else if (conversionList.Text.Equals("s_bedtime")) val.Data = CurrentMeasurement.s_bedtime.ToString();
else if (conversionList.Text.Equals("s_clinical_deep")) val.Data = CurrentMeasurement.s_clinical_deep.ToString();
else if (conversionList.Text.Equals("s_count")) val.Data = CurrentMeasurement.s_count.ToString();
else if (conversionList.Text.Equals("s_duration")) val.Data = CurrentMeasurement.s_duration.ToString();
else if (conversionList.Text.Equals("s_light")) val.Data = CurrentMeasurement.s_light.ToString();
else if (conversionList.Text.Equals("s_quality")) val.Data = CurrentMeasurement.s_quality.ToString();
else if (conversionList.Text.Equals("s_rem")) val.Data = CurrentMeasurement.s_rem.ToString();
else if (conversionList.Text.Equals("weight")) val.Data = CurrentMeasurement.weight.ToString();
else val.Data = "E"; // Error
Console.WriteLine("Value data: " + val.Data);
ResourceReference dev = new ResourceReference();
dev.Reference = "Device/" + CurrentDevice.Id;
ResourceReference pat = new ResourceReference();
pat.Reference = "Patient/" + CurrentPatient.Id;
Console.WriteLine("Patient reference: " + pat.Reference);
Console.WriteLine("Conversion: " + conversionList.Text);
CodeableConcept naam = new CodeableConcept();
naam.Text = conversionList.Text;
DateTime date = DateTime.ParseExact(CurrentMeasurement.date, "yyyymmdd", null);
Console.WriteLine("" + date.ToString());
var obs = new Observation() {Device = dev, Subject = pat, Value = val, Issued = date, Code = naam, Category = concept, Status = Observation.ObservationStatus.Final};
client.Create(obs);
conversionStatus.Text = "Done!";
}
public void TestLongDecimalSerialization()
{
var dec = 3.1415926535897932384626433833m;
var obs = new Observation { Value = new FhirDecimal(dec) };
var json = FhirSerializer.SerializeResourceToJson(obs);
var obs2 = (Observation)FhirParser.ParseFromJson(json);
Assert.AreEqual(dec.ToString(CultureInfo.InvariantCulture), ((FhirDecimal)obs2.Value).Value.Value.ToString(CultureInfo.InvariantCulture));
}
/// <summary>
/// Parse Observation
/// </summary>
public static Hl7.Fhir.Model.Observation ParseObservation(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Observation existingInstance = null)
{
Hl7.Fhir.Model.Observation result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Observation();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element language
else if (atName == "language")
{
result.LanguageElement = CodeParser.ParseCode(reader, errors);
}
// Parse element text
else if (atName == "text")
{
result.Text = NarrativeParser.ParseNarrative(reader, errors);
}
// Parse element contained
else if (atName == "contained")
{
result.Contained = new List <Hl7.Fhir.Model.Resource>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "contained"))
{
result.Contained.Add(ParserUtils.ParseContainedResource(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element name
else if (atName == "name")
{
result.Name = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element value
else if (atName.StartsWith("value"))
{
result.Value = FhirParser.ParseElement(reader, errors);
}
// Parse element interpretation
else if (atName == "interpretation")
{
result.Interpretation = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element comments
else if (atName == "comments")
{
result.CommentsElement = FhirStringParser.ParseFhirString(reader, errors);
}
// Parse element applies
else if (atName.StartsWith("applies"))
{
result.Applies = FhirParser.ParseElement(reader, errors);
}
// Parse element issued
else if (atName == "issued")
{
result.IssuedElement = InstantParser.ParseInstant(reader, errors);
}
// Parse element status
else if (atName == "status")
{
result.StatusElement = CodeParser.ParseCode <Hl7.Fhir.Model.ObservationStatus>(reader, errors);
}
// Parse element reliability
else if (atName == "reliability")
{
result.ReliabilityElement = CodeParser.ParseCode <Hl7.Fhir.Model.Observation.ObservationReliability>(reader, errors);
}
// Parse element bodySite
else if (atName == "bodySite")
{
result.BodySite = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element method
else if (atName == "method")
{
result.Method = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element identifier
else if (atName == "identifier")
{
result.Identifier = IdentifierParser.ParseIdentifier(reader, errors);
}
// Parse element subject
else if (atName == "subject")
{
result.Subject = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element performer
else if (atName == "performer")
{
result.Performer = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element referenceRange
else if (atName == "referenceRange")
{
result.ReferenceRange = new List <Hl7.Fhir.Model.Observation.ObservationReferenceRangeComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "referenceRange"))
{
result.ReferenceRange.Add(ObservationParser.ParseObservationReferenceRangeComponent(reader, errors));
}
reader.LeaveArray();
}
// Parse element component
else if (atName == "component")
{
result.Component = new List <Hl7.Fhir.Model.Observation.ObservationComponentComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "component"))
{
result.Component.Add(ObservationParser.ParseObservationComponentComponent(reader, errors));
}
reader.LeaveArray();
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
