public Dominomics(MultipleDirectorySelector mds, InputFormat inputF)
{
Progress = 0;
MyInputFormat = inputF;
//Read all SEPro Files to obtain a dictionary of ID (key) and fasta (value) and peptide (key) SeproFiles (values)
locusFastaDict = new Dictionary <string, string>();
myResultPackages = new List <FileInfoResultPackage>();
matrixClassDescriptionDictionary = new Dictionary <int, string>();
foreach (DirectoryClassDescription myDir in mds.MyDirectoryDescriptionDictionary)
{
if (inputF == InputFormat.SEPro)
{
FileInfo[] resultFilteredFiles = new DirectoryInfo(myDir.MyDirectoryFullName).GetFiles("*.sepr", SearchOption.AllDirectories);
FeedLocusFastaDictSEPro(myDir, resultFilteredFiles);
}
else if (inputF == InputFormat.MPex)
{
FileInfo[] resultFilteredFiles = new DirectoryInfo(myDir.MyDirectoryFullName).GetFiles("*.mpex", SearchOption.AllDirectories);
FeedLocusFastaDictPex(myDir, resultFilteredFiles);
}
matrixClassDescriptionDictionary.Add(myDir.ClassLabel, myDir.Description);
}
bdf = new HMMVerifier.BatchDomainFetcher();
}
public Form1()
{
InitializeComponent();
df = new BatchDomainFetcher();
}
