public static void Assemble()
{
Genome = new Genome();
ProgramState.Init();
AppSettings.Assemble();
RankSplit.Assemble();
FPKMFileNames = new List <string> ();
BAMFileNames = new List <string> ();
VariantFileNames = new List <string> ();
TypeDict = new ElementTypeDictionary();
Samples = new Dictionary <string, BioSample> ();
BioSample.ResetStaticLoader();
GeneToScaffDict = new Dictionary <string, string> ();
RegionToScaffDict = new Dictionary <string, string> ();
RSPToMergeSeries = new List <Series> ();
StatsTester.Assemble();
}
private static void RunSampleAllocationLoading(object ob)
{
try
{
BioSample.ResetStaticLoader();
List <PreSampleDefinition> prel = (List <PreSampleDefinition>)ob;
foreach (PreSampleDefinition pre in prel)
{
if (!Samples.ContainsKey(pre.ID))
{
Samples.Add(pre.ID, new BioSample(pre.ID));
}
Samples [pre.ID].RecieveDefinition(pre);
}
BioSample.LoadAllStatic();
}
catch (Exception e) {
ShowMessageWindow(e.Message, true);
}
}
