private void buttonFetch_Click(object sender, EventArgs e)
{
tabControlRight.SelectedTab = tabPageLog;
List <string> translations = gt.AssociationTranslator.Translate(textBoxFetch.Text);
List <Term> theTerms = gt.Terms;
List <Term> leafs = gt.FindLeafes(ref theTerms);
//We want to print besides the term if it is a leaf
foreach (string s in translations)
{
bool isLeaf = false;
//We need to remove the GO:
string translatedCorrected = System.Text.RegularExpressions.Regex.Replace(s, "GO:", "");
Term mtTerm = gt.getTermByID(translatedCorrected);
//Is it a leaf?
foreach (Term t in leafs)
{
if (s.EndsWith(t.id))
{
isLeaf = true;
}
}
richTextBoxLog.AppendText(mtTerm.id + " " + mtTerm.name + " " + "Is Leaf: " + isLeaf + "(" + mtTerm.nameSpace + ") " + mtTerm.definition + "\n\n");
}
}
public TermScoreCalculator(ref GOTerms gt, ref ResultParser rp)
{
this.gt = gt;
resultParser = rp;
//Find root term for the 3 GO namespaces
//Molecular function, Celular Component, Biological Process
List <string> topMostNodesIDs = gt.findTopMostNodes();
foreach (string s in topMostNodesIDs)
{
Term termToAdd = gt.getTermByID(s);
topMostNodes.Add(termToAdd);
}
BuildResultsInPopulationCache();
}
