/// <summary>
/// creates a new cell with no genetic information.
/// Initializes the 'normal' machinery.
/// </summary>
public NormalCell()
{
List <AACodon> stops = new List <AACodon>
{
AACodon.UGA,
AACodon.UAA,
AACodon.UAG
};
this.pol = new Polymerase();
this.rib = new Ribosome(AACodon.AUG, stops, new AAFactory(), 3);
this.dna = new Nucleobase[0];
this.rna = new Nucleobase[0];
this.pro = new List <IAminoAcid>();
}
public NormalCell(int sequenceLength)
{
if (sequenceLength < 0)
{
throw new ArgumentException("Illegal sequence length");
}
List <AACodon> stops = new List <AACodon>
{
AACodon.UGA,
AACodon.UAA,
AACodon.UAG
};
this.rib = new Ribosome(AACodon.AUG, stops, new AAFactory(), 3);
this.dna = FrameshiftUtil.GenerateDNASequence(sequenceLength);
this.rna = Polymerase.Transcribe(this.dna);
this.pro = this.rib.Translate(this.rna);
}