public static async Task <IActionResult> Run(
[HttpTrigger(AuthorizationLevel.Function, "post", Route = null)] HttpRequest req,
ILogger log)
{
string requestBody = await new StreamReader(req.Body).ReadToEndAsync();
var resp = await FHIRUtils.CallFHIRServer("", FHIRUtils.TransformBundle(requestBody, log), HttpMethod.Post, log);
string r = "{}";
if (resp != null)
{
r = resp.Content;
}
int sc = (int)resp.Status;
return(new ContentResult()
{
Content = r, StatusCode = sc, ContentType = "application/json"
});
}
public static string TransformBundle(string requestBody, ILogger log)
{
JObject result = JObject.Parse(requestBody);
if (result == null || result["resourceType"] == null || result["type"] == null)
{
return(requestBody);
}
string rtt = result.FHIRResourceType();
string bt = (string)result["type"];
if (rtt.Equals("Bundle") && bt.Equals("transaction"))
{
log.LogInformation($"TransformBundleProcess: looks like a valid transaction bundle");
JArray entries = (JArray)result["entry"];
if (entries.IsNullOrEmpty())
{
return(result.ToString());
}
log.LogInformation($"TransformBundleProcess: Phase 1 searching for existing entries on FHIR Server...");
foreach (JToken tok in entries)
{
if (!tok.IsNullOrEmpty() && tok["request"]["ifNoneExist"] != null)
{
string resource = (string)tok["request"]["url"];
string query = (string)tok["request"]["ifNoneExist"];
log.LogInformation($"TransformBundleProcess:Loading Resource {resource} with query {query}");
var r = FHIRUtils.CallFHIRServer($"{resource}?{query}", "", HttpMethod.Get, log).Result;
if (r.Success && r.Content != null)
{
var rs = JObject.Parse(r.Content);
if (!rs.IsNullOrEmpty() && ((string)rs["resourceType"]).Equals("Bundle") && !rs["entry"].IsNullOrEmpty())
{
JArray respentries = (JArray)rs["entry"];
string existingid = "urn:uuid:" + (string)respentries[0]["resource"]["id"];
tok["fullUrl"] = existingid;
}
}
}
}
//reparse JSON with replacement of existing ids prepare to convert to Batch bundle with PUT to maintain relationships
Dictionary <string, string> convert = new Dictionary <string, string>();
result["type"] = "batch";
entries = (JArray)result["entry"];
foreach (JToken tok in entries)
{
string urn = (string)tok["fullUrl"];
if (!string.IsNullOrEmpty(urn) && !tok["resource"].IsNullOrEmpty())
{
string rt = (string)tok["resource"]["resourceType"];
string rid = urn.Replace("urn:uuid:", "");
tok["resource"]["id"] = rid;
if (!convert.TryAdd(rid, rt))
{
//Duplicate catch
Guid g = Guid.NewGuid();
rid = g.ToString();
tok["resource"]["id"] = rid;
}
tok["request"]["method"] = "PUT";
tok["request"]["url"] = $"{rt}?_id={rid}";
}
}
log.LogInformation($"TransformBundleProcess: Phase 2 Localizing {convert.Count} resource entries...");
IEnumerable <JToken> refs = result.SelectTokens("$..reference");
foreach (JToken item in refs)
{
string s = item.ToString();
string t = "";
s = s.Replace("urn:uuid:", "");
if (convert.TryGetValue(s, out t))
{
item.Replace(t + "/" + s);
}
}
log.LogInformation($"TransformBundleProcess: Complete.");
return(result.ToString());
}
return(requestBody);
}
public static async Task Run([EventGridTrigger] EventGridEvent blobCreatedEvent,
[Blob("{data.url}", FileAccess.Read, Connection = "FBI-STORAGEACCT")] Stream myBlob,
ILogger log)
{
bool trbundles = true;
string strbundles = System.Environment.GetEnvironmentVariable("FBI-TRANSFORMBUNDLES");
if (!string.IsNullOrEmpty(strbundles) && (strbundles.ToLower().Equals("no") || strbundles.ToLower().Equals("false")))
{
trbundles = false;
}
StorageBlobCreatedEventData createdEvent = ((JObject)blobCreatedEvent.Data).ToObject <StorageBlobCreatedEventData>();
string name = createdEvent.Url.Substring(createdEvent.Url.LastIndexOf('/') + 1);
if (myBlob == null)
{
return;
}
log.LogInformation($"ImportFHIRBUndles: Processing file Name:{name} \n Size: {myBlob.Length}");
var cbclient = StorageUtils.GetCloudBlobClient(System.Environment.GetEnvironmentVariable("FBI-STORAGEACCT"));
StreamReader reader = new StreamReader(myBlob);
var text = await reader.ReadToEndAsync();
var trtext = (trbundles ? FHIRUtils.TransformBundle(text, log) : text);
var fhirbundle = await FHIRUtils.CallFHIRServer("", trtext, HttpMethod.Post, log);
var result = LoadErrorsDetected(trtext, fhirbundle, name, log);
//Bundle Post was Throttled we can retry
if (!fhirbundle.Success && fhirbundle.Status == System.Net.HttpStatusCode.TooManyRequests)
{
//Currently cannot use retry hints with EventGrid Trigger function bindings so we will throw and exception to enter eventgrid retry logic for FHIR Server throttling and do
//our own dead letter for internal errors or unrecoverable conditions
log.LogInformation($"ImportFHIRBUndles File Name:{name} is throttled...");
throw new Exception($"ImportFHIRBUndles: Transient Error File: {name}...Entering eventgrid retry process until success or ultimate failure to dead letter if configured.");
}
//No Errors move to processed container
if (fhirbundle.Success && ((JArray)result["errors"]).Count == 0 && ((JArray)result["throttled"]).Count == 0)
{
await StorageUtils.MoveTo(cbclient, "bundles", "bundlesprocessed", name, $"{name}.processed", log);
await StorageUtils.WriteStringToBlob(cbclient, "bundlesprocessed", $"{name}.processed.result", fhirbundle.Content, log);
log.LogInformation($"ImportFHIRBUndles Processed file Name:{name}");
}
//Handle Errors from FHIR Server of proxy
if (!fhirbundle.Success || ((JArray)result["errors"]).Count > 0)
{
await StorageUtils.MoveTo(cbclient, "bundles", "bundleserr", name, $"{name}.err", log);
await StorageUtils.WriteStringToBlob(cbclient, "bundleserr", $"{name}.err.response", fhirbundle.Content, log);
await StorageUtils.WriteStringToBlob(cbclient, "bundleserr", $"{name}.err.actionneeded", result.ToString(), log);
log.LogInformation($"ImportFHIRBUndles File Name:{name} had errors. Moved to deadletter bundleserr directory");
}
//Handle Throttled Requests inside of bundle so we will create a new bundle to retry
if (fhirbundle.Success && ((JArray)result["throttled"]).Count > 0)
{
var nb = NDJSONConverter.initBundle();
nb["entry"] = result["throttled"];
string fn = $"retry{Guid.NewGuid().ToString().Replace("-","")}.json";
await StorageUtils.MoveTo(cbclient, "bundles", "bundlesprocessed", name, $"{name}.processed", log);
await StorageUtils.WriteStringToBlob(cbclient, "bundlesprocessed", $"{name}.processed.result", fhirbundle.Content, log);
await StorageUtils.WriteStringToBlob(cbclient, "bundles", fn, nb.ToString(), log);
log.LogInformation($"ImportFHIRBUndles File Name:{name} had throttled resources in response bundle. Moved to processed..Created retry bunde {fn}");
}
}