private void DoOrg(int b, List <string> rx)
{
organisation.Id = FhirHelper.MakeId();
organisation.Identifier.Add(FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/ods-organization-code", rx[b + EMUData.SDSORGANISATIONID]));
ContactPoint cp = new ContactPoint
{
System = ContactPoint.ContactPointSystem.Phone,
Use = ContactPoint.ContactPointUse.Work,
Value = rx[b + EMUData.ORGANISATIONTELECOM]
};
organisation.Telecom.Add(cp);
CodeableConcept cc = new CodeableConcept();
cc.Coding.Add(FhirHelper.MakeCoding("https://fhir.nhs.uk/R4/CodeSystem/organisation-type", rx[b + EMUData.ORGANISATIONTYPE], null));
organisation.Type.Add(cc);
organisation.Name = rx[b + EMUData.ORGANISATIONNAME];
organisation.Address.Add(MakeAddress(b, rx));
Identifier pct = FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/ods-organization-code", rx[b + EMUData.PCTORGANISATIONSDSID]);
ResourceReference pctref = new ResourceReference
{
Identifier = pct
};
organisation.PartOf = pctref;
}
private static MedicationRequest.DispenseRequestComponent MakeDispenseRequest(ResourceReference nom, System.Collections.Generic.List <string> rx,
System.Collections.Generic.List <string> item)
{
MedicationRequest.DispenseRequestComponent dr = new MedicationRequest.DispenseRequestComponent();
Extension e = FhirHelper.MakeExtension(null, "https://fhir.nhs.uk/R4/StructureDefinition/Extension-performerType",
FhirHelper.MakeCoding("https://fhir.nhs.uk/R4/CodeSystem/dispensing-site-preference", rx[EMUData.DISPENSINGSITEPREFERENCE], null));
try
{
dr.Quantity = new SimpleQuantity
{
Code = item[EMUData.QUANTITYCODE],
System = "http://snomed.info/sct",
Unit = item[EMUData.QUANTITYTEXT],
Value = Convert.ToDecimal(item[EMUData.QUANTITYCOUNT])
};
}
catch (Exception ex)
{
#pragma warning disable CA2241 // Provide correct arguments to formatting methods
Console.WriteLine("Exception: {ex} making SimpleQuantity: {value}", ex.Message, item[EMUData.QUANTITYCOUNT]);
#pragma warning restore CA2241 // Provide correct arguments to formatting methods
}
if (nom != null)
{
dr.Performer = nom;
}
dr.Extension.Add(e);
return(dr);
}
private static void DoResponsiblePractitioner(MedicationRequest m, ParticipantMaker a)
{
Extension e = FhirHelper.MakeExtension(null, "https://fhir.nhs.uk/R4/StructureDefinition/Extension-DM-ResponsiblePractitioner",
FhirHelper.MakeInternalReference(a.Role));
m.Extension.Add(e);
}
private static CodeableConcept DoMedication(System.Collections.Generic.List <string> item)
{
CodeableConcept cc = new CodeableConcept();
cc.Coding.Add(FhirHelper.MakeCoding("http://snomed.info/sct", item[EMUData.SUBSTANCECODE], item[EMUData.DISPLAYNAME]));
return(cc);
}
private static void AddPatientGp(Patient p, System.Collections.Generic.List <string> rx)
{
ResourceReference r = new ResourceReference
{
Identifier = FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/ods-organization-code", rx[EMUData.PATIENTPRIMARYCAREPROVIDESDSID])
};
p.ManagingOrganization = r;
}
private static Identifier MakeGroupIdentifier(System.Collections.Generic.List <string> rx)
{
Identifier sfid = FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/prescription-short-form",
rx[EMUData.PRESCRIPTIONID]);
Extension e = FhirHelper.MakeExtension(null, "https://fhir.nhs.uk/R4/StructureDefinition/Extension-PrescriptionId",
FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/prescription", rx[EMUData.PRESCRIPTIONCLINICALSTATEMENTID]));
sfid.Extension.Add(e);
return(sfid);
}
private static MessageHeader.MessageSourceComponent MakeSource()
{
MessageHeader.MessageSourceComponent s = new MessageHeader.MessageSourceComponent();
Extension a = FhirHelper.MakeExtension("https://fhir.nhs.uk/R4/StructureDefinition/Extension-spineEndpoint",
FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/spine-ASID", asid));
s.Extension.Add(a);
s.Name = ods;
s.Endpoint = url;
return(s);
}
private static void DoPrescriptionType(MedicationRequest m, System.Collections.Generic.List <string> rx)
{
Coding ptc = FhirHelper.MakeCoding("https://fhir.nhs.uk/R4/CodeSystem/prescription-type", rx[EMUData.PRESCRIPTIONTYPE], null);
if (rx[EMUData.PRESCRIPTIONTYPE].Equals("0001"))
{
ptc.Display = "General Practitioner Prescribing";
}
Extension e = FhirHelper.MakeExtension(null, "https://fhir.nhs.uk/R4/StructureDefinition/Extension-prescriptionType", ptc);
m.Extension.Add(e);
}
private static MessageHeader MakeMessageHeader(ParticipantMaker a)
{
MessageHeader header = new MessageHeader
{
Id = FhirHelper.MakeId(),
Event = FhirHelper.MakeCoding("https://fhir.nhs.uk/R4/CodeSystem/message-event", "prescription-order", "Prescription Order"),
Sender = FhirHelper.MakeInternalReference(a.Role)
};
header.Sender.Display = a.Practitioner.Name[0].Text;
header.Source = MakeSource();
return(header);
}
private static ResourceReference GetNominatedPharmacyReference(System.Collections.Generic.List <string> rx)
{
ResourceReference r = null;
string n = rx[EMUData.NOMINATEDPHARMACYID].Trim();
if (n.Length > 0)
{
r = new ResourceReference
{
Identifier = FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/ods-organization-code", n)
};
}
return(r);
}
public void Go()
{
SanityCheckOutput();
EMUData emu = new EMUData(prescriptionsFile, itemsFile);
emu.Load();
foreach (string pid in emu.GetPrescriptionIDs())
{
Bundle b = MakeBundle(emu.GetPrescriptionData(pid), emu.GetItems(pid));
if (b != null)
{
FhirHelper.WriteResource(pid, b, outputDirectory, xml);
}
}
}
private void DoRole(int b, List <string> rx)
{
role.Id = FhirHelper.MakeId();
role.Identifier.Add(FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/sds-role-profile-id", rx[b + EMUData.ROLEPROFILE]));
role.Practitioner = FhirHelper.MakeInternalReference(practitioner);
role.Organization = FhirHelper.MakeInternalReference(organisation);
ContactPoint cp = new ContactPoint
{
System = ContactPoint.ContactPointSystem.Phone,
Use = ContactPoint.ContactPointUse.Work,
Value = rx[b + EMUData.ORGANISATIONTELECOM]
};
role.Telecom.Add(cp);
}
private void DoPractitioner(int b, List <string> rx)
{
practitioner.Id = FhirHelper.MakeId();
HumanName h = new HumanName
{
Text = rx[b + EMUData.PERSONNAME]
};
List <HumanName> ah = new List <HumanName>
{
h
};
practitioner.Name = ah;
practitioner.Identifier.Add(FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/sds-user-id", rx[b + EMUData.SDSUSERID]));
}
private static void AddNhsNumber(Patient p, System.Collections.Generic.List <string> rx)
{
currentNhsNumber = rx[EMUData.PATIENTID];
Identifier n = FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/nhs-number", rx[EMUData.PATIENTID]);
Extension evs = new Extension
{
Url = "https://fhir.nhs.uk/R4/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus"
};
CodeableConcept vccvs = new CodeableConcept();
vccvs.Coding.Add(FhirHelper.MakeCoding("https://fhir.nhs.uk/R4/CodeSystem/UKCore-NHSNumberVerificationStatus",
"01", "Number present and verified"));
evs.Value = vccvs;
n.Extension.Add(evs);
p.Identifier.Add(n);
}
public static void WriteResource(string pid, Resource r, string outputDirectory, bool xml)
{
string rid = pid ?? r.Id;
string rname = r.ResourceType.ToString();
if (xml)
{
FhirXmlSerializer xs = new FhirXmlSerializer();
string sr = xs.SerializeToString(r);
FhirHelper.Write(rid, rname, sr, outputDirectory, xml);
}
else
{
FhirJsonSerializer js = new FhirJsonSerializer();
string sr = js.SerializeToString(r);
FhirHelper.Write(rid, rname, sr, outputDirectory, xml);
}
}
private static Patient MakePatient(System.Collections.Generic.List <string> rx)
{
DateTime d = new DateTime();
if (!FhirHelper.MakeDate(rx[EMUData.PATIENTBIRTHTIME], out d))
{
Console.WriteLine("Failed to parse birth date: " + rx[EMUData.PATIENTBIRTHTIME]);
}
Patient p = new Patient
{
Id = FhirHelper.MakeId(),
BirthDate = FhirHelper.FormatDate(d),
Gender = GetGender(rx[EMUData.PATIENTGENDER])
};
AddNhsNumber(p, rx);
AddPatientName(p, rx);
AddPatientAddress(p, rx);
AddPatientGp(p, rx);
return(p);
}
private static MedicationRequest MakeMedicationRequest(Patient p, System.Collections.Generic.List <string> rx,
System.Collections.Generic.List <string> item, ResourceReference nom, ParticipantMaker a)
{
MedicationRequest m = new MedicationRequest
{
Id = FhirHelper.MakeId()
};
m.Status = MedicationRequest.medicationrequestStatus.Active;
m.Intent = MedicationRequest.medicationRequestIntent.Order;
m.Subject = FhirHelper.MakeInternalReference(p);
m.Identifier.Add(FhirHelper.MakeIdentifier("https://fhir.nhs.uk/Id/prescription-line-id", item[EMUData.LINEITEMID]));
ResourceReference rq = FhirHelper.MakeInternalReference(a.Role);
rq.Display = a.Practitioner.Name[0].Text;
m.Requester = rq;
m.AuthoredOn = rx[EMUData.AUTHORPARTICIPATIONTIME];
m.GroupIdentifier = MakeGroupIdentifier(rx);
DoPrescriptionType(m, rx);
DoResponsiblePractitioner(m, a);
m.Medication = DoMedication(item);
m.CourseOfTherapyType = MakeCourseOfTherapyType(rx);
if (item[EMUData.DOSAGEINTRUCTIONS].Trim().Length > 0)
{
Dosage di = new Dosage
{
Text = item[EMUData.DOSAGEINTRUCTIONS]
};
m.DosageInstruction.Add(di);
if (item[EMUData.ADDITIONALINSTRUCTIONS].Trim().Length > 0)
{
di.PatientInstruction = item[EMUData.ADDITIONALINSTRUCTIONS];
}
}
m.DispenseRequest = MakeDispenseRequest(nom, rx, item);
return(m);
}
private static Bundle MakeBundle(System.Collections.Generic.List <string> rx, System.Collections.Generic.List <System.Collections.Generic.List <string> > items)
{
Bundle b = new Bundle
{
Id = FhirHelper.MakeId(),
Type = Bundle.BundleType.Message
};
ParticipantMaker author = new ParticipantMaker();
author.Make(EMUData.AUTHORROLEPROFILE, rx);
GetParticipantIdentifiers(author);
Patient p = MakePatient(rx);
if (resdir != null)
{
if (!practitioners.ContainsKey(currentPractitioner))
{
FhirHelper.WriteResource(null, author.Practitioner, resdir, xml);
practitioners.Add(currentPractitioner, author.Practitioner.Id);
}
else
{
author.Practitioner.Id = practitioners[currentPractitioner];
}
if (!organisations.ContainsKey(currentOrganisation))
{
FhirHelper.WriteResource(null, author.Organisation, resdir, xml);
organisations.Add(currentOrganisation, author.Organisation.Id);
}
else
{
author.Organisation.Id = organisations[currentOrganisation];
}
if (!roles.ContainsKey(currentRole))
{
FhirHelper.WriteResource(null, author.Role, resdir, xml);
roles.Add(currentRole, author.Role.Id);
}
else
{
author.Role.Id = roles[currentRole];
}
if (!patients.ContainsKey(currentNhsNumber))
{
FhirHelper.WriteResource(null, p, resdir, xml);
patients.Add(currentNhsNumber, p.Id);
}
else
{
p.Id = patients[currentNhsNumber];
}
}
MessageHeader header = MakeMessageHeader(author);
FhirHelper.AddEntryToBundle(b, header);
FhirHelper.AddEntryToBundle(b, p);
FhirHelper.AddEntryToBundle(b, author.Practitioner);
FhirHelper.AddEntryToBundle(b, author.Organisation);
FhirHelper.AddEntryToBundle(b, author.Role);
ResourceReference nominatedPharmacy = GetNominatedPharmacyReference(rx);
foreach (System.Collections.Generic.List <string> item in items)
{
MedicationRequest m = MakeMedicationRequest(p, rx, item, nominatedPharmacy, author);
if (m != null)
{
FhirHelper.AddEntryToBundle(b, m);
header.Focus.Add(FhirHelper.MakeInternalReference(m));
FhirHelper.WriteResource(null, m, resdir, xml);
}
}
header.Focus.Add(FhirHelper.MakeInternalReference(p));
header.Focus.Add(FhirHelper.MakeInternalReference(author.Role));
return(b);
}