private static DicomDataset ReadFragment(byte[] bytes, Endian endian, bool explicitVr)
{
var dataset = new DicomDataset();
var reader = new DicomReader { IsExplicitVR = explicitVr };
var byteSource = new ByteBufferByteSource(new MemoryByteBuffer(bytes)) { Endian = endian };
reader.Read(byteSource, new DicomDatasetReaderObserver(dataset));
return dataset;
}
public static IAsyncResult BeginRead(
this DicomReader @this,
IByteSource source,
IDicomReaderObserver observer,
Func <ParseState, bool> stop,
AsyncCallback callback,
object state)
{
return(AsyncFactory.ToBegin(@this.ReadAsync(source, observer, stop), callback, state));
}
public void Read_ValidExplicitVRSequence_YieldsSuccess(byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader {
IsExplicitVR = true
};
var observer = new MockObserver();
var result = reader.Read(source, observer);
Assert.Equal(DicomReaderResult.Success, result);
}
public void BeginRead_ValidExplicitVRData_YieldsSuccess(DicomTag tag, DicomVR vr, string data, byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader { IsExplicitVR = true };
var observer = new LastElementObserver();
var result = reader.EndRead(reader.BeginRead(source, observer, null, null, null));
Assert.Equal(DicomReaderResult.Success, result);
Assert.Equal(tag, observer.Tag);
Assert.Equal(vr, observer.VR);
Assert.Equal(data, observer.Data);
}
private DicomDataset DeepClone_(DicomDataset dataset)
{
var ms = new MemoryStream();
var target = new StreamByteTarget(ms);
var writer = new DicomWriter(DicomTransferSyntax.ImplicitVRLittleEndian, DicomWriteOptions.Default, target);
var walker = new DicomDatasetWalker(dataset);
walker.Walk(writer);
var clone = new DicomDataset();
var reader = new DicomReader { IsExplicitVR = false };
var byteSource = new ByteBufferByteSource(
new MemoryByteBuffer(ms.ToArray()));
reader.Read(byteSource, new DicomDatasetReaderObserver(clone));
return clone;
}
public void BeginRead_ValidExplicitVRData_YieldsSuccess(DicomTag tag, DicomVR vr, string data, byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader {
IsExplicitVR = true
};
var observer = new LastElementObserver();
var result = reader.EndRead(reader.BeginRead(source, observer, null, null, null));
Assert.Equal(DicomReaderResult.Success, result);
Assert.Equal(tag, observer.Tag);
Assert.Equal(vr, observer.VR);
Assert.Equal(data, observer.Data);
}
public static DicomReaderResult EndRead(this DicomReader @this, IAsyncResult result)
{
return(AsyncFactory.ToEnd <DicomReaderResult>(result));
}
private static async Task <Tuple <DicomReaderResult, DicomFileFormat, DicomTransferSyntax> > DoParseAsync(
IByteSource source,
IDicomReaderObserver fileMetasetInfoObserver,
IDicomReaderObserver datasetObserver,
Func <ParseState, bool> stop,
DicomTransferSyntax syntax,
DicomFileFormat fileFormat)
{
string code = null, uid = null;
var obs = new DicomReaderCallbackObserver();
if (fileFormat != DicomFileFormat.DICOM3)
{
obs.Add(
DicomTag.RecognitionCodeRETIRED,
(sender, ea) =>
{
try
{
code = Encoding.UTF8.GetString(ea.Data.Data, 0, ea.Data.Data.Length);
}
catch
{
}
});
}
obs.Add(
DicomTag.TransferSyntaxUID,
(sender, ea) =>
{
try
{
uid = Encoding.UTF8.GetString(ea.Data.Data, 0, ea.Data.Data.Length);
}
catch
{
}
});
var reader = new DicomReader {
IsExplicitVR = syntax.IsExplicitVR, IsDeflated = false
};
DicomReaderResult result;
if (fileFormat == DicomFileFormat.DICOM3NoFileMetaInfo)
{
result =
await
reader.ReadAsync(source, new DicomReaderMultiObserver(obs, datasetObserver), stop).ConfigureAwait(false);
UpdateFileFormatAndSyntax(code, uid, ref fileFormat, ref syntax);
}
else
{
if (
await
reader.ReadAsync(
source,
new DicomReaderMultiObserver(obs, fileMetasetInfoObserver),
_FileMetaInfoStopCriterion).ConfigureAwait(false) != DicomReaderResult.Stopped)
{
throw new DicomReaderException("DICOM File Meta Info ended prematurely");
}
UpdateFileFormatAndSyntax(code, uid, ref fileFormat, ref syntax);
// rewind to last marker (start of previous tag)... ugly because
// it requires knowledge of how the parser is implemented
source.Rewind();
source.Endian = syntax.Endian;
reader.IsExplicitVR = syntax.IsExplicitVR;
reader.IsDeflated = syntax.IsDeflate;
result = await reader.ReadAsync(source, datasetObserver, stop).ConfigureAwait(false);
}
return(Tuple.Create(result, fileFormat, syntax));
}
/// <summary>
/// Process P-DATA-TF PDUs.
/// </summary>
/// <param name="pdu">PDU to process.</param>
private async Task ProcessPDataTFAsync(PDataTF pdu)
{
try
{
foreach (var pdv in pdu.PDVs)
{
if (_dimse == null)
{
// create stream for receiving command
if (_dimseStream == null)
{
_dimseStream = new MemoryStream();
_dimseStreamFile = null;
}
}
else
{
// create stream for receiving dataset
if (_dimseStream == null)
{
if (_dimse.Type == DicomCommandField.CStoreRequest)
{
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
var file = new DicomFile();
file.FileMetaInfo.MediaStorageSOPClassUID = pc.AbstractSyntax;
file.FileMetaInfo.MediaStorageSOPInstanceUID =
_dimse.Command.Get<DicomUID>(DicomTag.AffectedSOPInstanceUID);
file.FileMetaInfo.TransferSyntax = pc.AcceptedTransferSyntax;
file.FileMetaInfo.ImplementationClassUID = Association.RemoteImplemetationClassUID;
file.FileMetaInfo.ImplementationVersionName = Association.RemoteImplementationVersion;
file.FileMetaInfo.SourceApplicationEntityTitle = Association.CallingAE;
CreateCStoreReceiveStream(file);
}
else
{
_dimseStream = new MemoryStream();
_dimseStreamFile = null;
}
}
}
await this._dimseStream.WriteAsync(pdv.Value, 0, pdv.Value.Length).ConfigureAwait(false);
if (pdv.IsLastFragment)
{
if (pdv.IsCommand)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
var command = new DicomDataset();
var reader = new DicomReader();
reader.IsExplicitVR = false;
reader.Read(new StreamByteSource(_dimseStream), new DicomDatasetReaderObserver(command));
_dimseStream = null;
_dimseStreamFile = null;
var type = command.Get<DicomCommandField>(DicomTag.CommandField);
switch (type)
{
case DicomCommandField.CStoreRequest:
_dimse = new DicomCStoreRequest(command);
break;
case DicomCommandField.CStoreResponse:
_dimse = new DicomCStoreResponse(command);
break;
case DicomCommandField.CFindRequest:
_dimse = new DicomCFindRequest(command);
break;
case DicomCommandField.CFindResponse:
_dimse = new DicomCFindResponse(command);
break;
case DicomCommandField.CMoveRequest:
_dimse = new DicomCMoveRequest(command);
break;
case DicomCommandField.CMoveResponse:
_dimse = new DicomCMoveResponse(command);
break;
case DicomCommandField.CEchoRequest:
_dimse = new DicomCEchoRequest(command);
break;
case DicomCommandField.CEchoResponse:
_dimse = new DicomCEchoResponse(command);
break;
case DicomCommandField.NActionRequest:
_dimse = new DicomNActionRequest(command);
break;
case DicomCommandField.NActionResponse:
_dimse = new DicomNActionResponse(command);
break;
case DicomCommandField.NCreateRequest:
_dimse = new DicomNCreateRequest(command);
break;
case DicomCommandField.NCreateResponse:
_dimse = new DicomNCreateResponse(command);
break;
case DicomCommandField.NDeleteRequest:
_dimse = new DicomNDeleteRequest(command);
break;
case DicomCommandField.NDeleteResponse:
_dimse = new DicomNDeleteResponse(command);
break;
case DicomCommandField.NEventReportRequest:
_dimse = new DicomNEventReportRequest(command);
break;
case DicomCommandField.NEventReportResponse:
_dimse = new DicomNEventReportResponse(command);
break;
case DicomCommandField.NGetRequest:
_dimse = new DicomNGetRequest(command);
break;
case DicomCommandField.NGetResponse:
_dimse = new DicomNGetResponse(command);
break;
case DicomCommandField.NSetRequest:
_dimse = new DicomNSetRequest(command);
break;
case DicomCommandField.NSetResponse:
_dimse = new DicomNSetResponse(command);
break;
default:
_dimse = new DicomMessage(command);
break;
}
_dimse.PresentationContext =
Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
if (!_dimse.HasDataset)
{
this.PerformDimse(this._dimse);
_dimse = null;
return;
}
}
else
{
if (_dimse.Type != DicomCommandField.CStoreRequest)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
_dimse.Dataset = new DicomDataset();
_dimse.Dataset.InternalTransferSyntax = pc.AcceptedTransferSyntax;
var source = new StreamByteSource(_dimseStream);
source.Endian = pc.AcceptedTransferSyntax.Endian;
var reader = new DicomReader();
reader.IsExplicitVR = pc.AcceptedTransferSyntax.IsExplicitVR;
reader.Read(source, new DicomDatasetReaderObserver(_dimse.Dataset));
_dimseStream = null;
_dimseStreamFile = null;
}
else
{
var request = _dimse as DicomCStoreRequest;
try
{
var dicomFile = GetCStoreDicomFile();
_dimseStream = null;
_dimseStreamFile = null;
// NOTE: dicomFile will be valid with the default implementation of CreateCStoreReceiveStream() and
// GetCStoreDicomFile(), but can be null if a child class overrides either method and changes behavior.
// See documentation on CreateCStoreReceiveStream() and GetCStoreDicomFile() for information about why
// this might be desired.
request.File = dicomFile;
if (request.File != null)
{
request.Dataset = request.File.Dataset;
}
}
catch (Exception e)
{
// failed to parse received DICOM file; send error response instead of aborting connection
SendResponse(
new DicomCStoreResponse(
request,
new DicomStatus(DicomStatus.ProcessingFailure, e.Message)));
Logger.Error("Error parsing C-Store dataset: {@error}", e);
(this as IDicomCStoreProvider).OnCStoreRequestException(
_dimseStreamFile != null ? _dimseStreamFile.Name : null, e);
return;
}
}
this.PerformDimse(this._dimse);
_dimse = null;
}
}
}
}
catch (Exception e)
{
SendAbort(DicomAbortSource.ServiceUser, DicomAbortReason.NotSpecified);
Logger.Error("Exception processing P-Data-TF PDU: {@error}", e);
}
finally
{
SendNextMessage();
}
}
private static async Task<Tuple<DicomReaderResult, DicomFileFormat, DicomTransferSyntax>> DoParseAsync(
IByteSource source,
IDicomReaderObserver fileMetasetInfoObserver,
IDicomReaderObserver datasetObserver,
Func<ParseState, bool> stop,
DicomTransferSyntax syntax,
DicomFileFormat fileFormat)
{
string code = null, uid = null;
var obs = new DicomReaderCallbackObserver();
if (fileFormat != DicomFileFormat.DICOM3)
{
obs.Add(
DicomTag.RecognitionCodeRETIRED,
(sender, ea) =>
{
try
{
code = Encoding.UTF8.GetString(ea.Data.Data, 0, ea.Data.Data.Length);
}
catch
{
}
});
}
obs.Add(
DicomTag.TransferSyntaxUID,
(sender, ea) =>
{
try
{
uid = Encoding.UTF8.GetString(ea.Data.Data, 0, ea.Data.Data.Length);
}
catch
{
}
});
var reader = new DicomReader { IsExplicitVR = syntax.IsExplicitVR, IsDeflated = false };
DicomReaderResult result;
if (fileFormat == DicomFileFormat.DICOM3NoFileMetaInfo)
{
result =
await
reader.ReadAsync(source, new DicomReaderMultiObserver(obs, datasetObserver), stop).ConfigureAwait(false);
UpdateFileFormatAndSyntax(code, uid, ref fileFormat, ref syntax);
}
else
{
if (
await
reader.ReadAsync(
source,
new DicomReaderMultiObserver(obs, fileMetasetInfoObserver),
FileMetaInfoStopCriterion).ConfigureAwait(false) != DicomReaderResult.Stopped)
{
throw new DicomReaderException("DICOM File Meta Info ended prematurely");
}
UpdateFileFormatAndSyntax(code, uid, ref fileFormat, ref syntax);
// rewind to last marker (start of previous tag)... ugly because
// it requires knowledge of how the parser is implemented
source.Rewind();
source.Endian = syntax.Endian;
reader.IsExplicitVR = syntax.IsExplicitVR;
reader.IsDeflated = syntax.IsDeflate;
result = await reader.ReadAsync(source, datasetObserver, stop).ConfigureAwait(false);
}
return Tuple.Create(result, fileFormat, syntax);
}
private void ProcessPDataTF(object state) {
var pdu = (PDataTF)state;
try {
foreach (var pdv in pdu.PDVs) {
if (_dimse == null) {
// create stream for receiving command
if (_dimseStream == null)
_dimseStream = new MemoryStream();
} else {
// create stream for receiving dataset
if (_dimseStream == null) {
if (_dimse.Type == DicomCommandField.CStoreRequest) {
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
var file = new DicomFile();
file.FileMetaInfo.MediaStorageSOPClassUID = pc.AbstractSyntax;
file.FileMetaInfo.MediaStorageSOPInstanceUID = _dimse.Command.Get<DicomUID>(DicomTag.AffectedSOPInstanceUID);
file.FileMetaInfo.TransferSyntax = pc.AcceptedTransferSyntax;
file.FileMetaInfo.ImplementationClassUID = Association.RemoteImplemetationClassUID;
file.FileMetaInfo.ImplementationVersionName = Association.RemoteImplementationVersion;
file.FileMetaInfo.SourceApplicationEntityTitle = Association.CallingAE;
var fileName = TemporaryFile.Create();
file.Save(fileName);
_dimseStream = File.OpenWrite(fileName);
_dimseStream.Seek(0, SeekOrigin.End);
} else {
_dimseStream = new MemoryStream();
}
}
}
_dimseStream.Write(pdv.Value, 0, pdv.Value.Length);
if (pdv.IsLastFragment) {
if (pdv.IsCommand) {
_dimseStream.Seek(0, SeekOrigin.Begin);
var command = new DicomDataset();
var reader = new DicomReader();
reader.IsExplicitVR = false;
reader.Read(new StreamByteSource(_dimseStream), new DicomDatasetReaderObserver(command));
_dimseStream = null;
var type = command.Get<DicomCommandField>(DicomTag.CommandField);
switch (type) {
case DicomCommandField.CStoreRequest:
_dimse = new DicomCStoreRequest(command);
break;
case DicomCommandField.CStoreResponse:
_dimse = new DicomCStoreResponse(command);
break;
case DicomCommandField.CFindRequest:
_dimse = new DicomCFindRequest(command);
break;
case DicomCommandField.CFindResponse:
_dimse = new DicomCFindResponse(command);
break;
case DicomCommandField.CMoveRequest:
_dimse = new DicomCMoveRequest(command);
break;
case DicomCommandField.CMoveResponse:
_dimse = new DicomCMoveResponse(command);
break;
case DicomCommandField.CEchoRequest:
_dimse = new DicomCEchoRequest(command);
break;
case DicomCommandField.CEchoResponse:
_dimse = new DicomCEchoResponse(command);
break;
case DicomCommandField.NActionRequest:
_dimse = new DicomNActionRequest(command);
break;
case DicomCommandField.NActionResponse:
_dimse = new DicomNActionResponse(command);
break;
case DicomCommandField.NCreateRequest:
_dimse = new DicomNCreateRequest(command);
break;
case DicomCommandField.NCreateResponse:
_dimse = new DicomNCreateResponse(command);
break;
case DicomCommandField.NDeleteRequest:
_dimse = new DicomNDeleteRequest(command);
break;
case DicomCommandField.NDeleteResponse:
_dimse = new DicomNDeleteResponse(command);
break;
case DicomCommandField.NEventReportRequest:
_dimse = new DicomNEventReportRequest(command);
break;
case DicomCommandField.NEventReportResponse:
_dimse = new DicomNEventReportResponse(command);
break;
case DicomCommandField.NGetRequest:
_dimse = new DicomNGetRequest(command);
break;
case DicomCommandField.NGetResponse:
_dimse = new DicomNGetResponse(command);
break;
case DicomCommandField.NSetRequest:
_dimse = new DicomNSetRequest(command);
break;
case DicomCommandField.NSetResponse:
_dimse = new DicomNSetResponse(command);
break;
default:
_dimse = new DicomMessage(command);
break;
}
if (!_dimse.HasDataset) {
if (DicomMessage.IsRequest(_dimse.Type))
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
else
_processQueue.Queue((_dimse as DicomResponse).RequestMessageID, PerformDimseCallback, _dimse);
_dimse = null;
return;
}
} else {
if (_dimse.Type != DicomCommandField.CStoreRequest) {
_dimseStream.Seek(0, SeekOrigin.Begin);
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
_dimse.Dataset = new DicomDataset();
_dimse.Dataset.InternalTransferSyntax = pc.AcceptedTransferSyntax;
var source = new StreamByteSource(_dimseStream);
source.Endian = pc.AcceptedTransferSyntax.Endian;
var reader = new DicomReader();
reader.IsExplicitVR = pc.AcceptedTransferSyntax.IsExplicitVR;
reader.Read(source, new DicomDatasetReaderObserver(_dimse.Dataset));
_dimseStream = null;
} else {
var fileName = (_dimseStream as FileStream).Name;
_dimseStream.Close();
_dimseStream = null;
var request = _dimse as DicomCStoreRequest;
try {
request.File = DicomFile.Open(fileName);
} catch (Exception e) {
// failed to parse received DICOM file; send error response instead of aborting connection
SendResponse(new DicomCStoreResponse(request, new DicomStatus(DicomStatus.ProcessingFailure, e.Message)));
Logger.Error("Error parsing C-Store dataset: " + e.ToString());
(this as IDicomCStoreProvider).OnCStoreRequestException(fileName, e);
return;
}
request.File.File.IsTempFile = true;
request.Dataset = request.File.Dataset;
}
if (DicomMessage.IsRequest(_dimse.Type))
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
else
_processQueue.Queue((_dimse as DicomResponse).RequestMessageID, PerformDimseCallback, _dimse);
_dimse = null;
}
}
}
} catch (Exception e) {
SendAbort(DicomAbortSource.ServiceUser, DicomAbortReason.NotSpecified);
Logger.Error("Exception processing P-Data-TF PDU: " + e.ToString());
} finally {
SendNextMessage();
}
}
public void Read_ValidExplicitVRSequence_YieldsSuccess(byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader { IsExplicitVR = true };
var observer = new MockObserver();
var result = reader.Read(source, observer);
Assert.Equal(DicomReaderResult.Success, result);
}