public void test2()
{
string testFile = @"D:\Data\UIMF\Problem_datasets\FPGA\QCSHEW_FPGA_99min_0003.UIMF";
RunFactory rf = new RunFactory();
UIMFRun run = (UIMFRun)rf.CreateRun(testFile);
UIMFRunTester tester = new UIMFRunTester();
tester.DisplayBasicRunInfo(run);
//UIMFLibrary.DataReader dr = new UIMFLibrary.DataReader();
//dr.OpenUIMF(testFile);
tester.DisplayFrameParameters(run, run.MinLCScan, run.MaxLCScan);
}
public void test_usingStandardFile()
{
RunFactory runfactory = new RunFactory();
UIMFRun run = (UIMFRun)runfactory.CreateRun(standardFile);
UIMFRunTester tester = new UIMFRunTester();
int startScan = run.MinLCScan;
int stopScan = run.MaxLCScan;
int startFrame = 1;
int stopFrame = 10;
tester.DisplayBasicRunInfo(run);
tester.GenerateMassSpectraForRanges(run, startFrame, stopFrame, startScan, stopScan);
}
public void displayFrameInfo()
{
RunFactory runfactory = new RunFactory();
UIMFRun run = (UIMFRun)runfactory.CreateRun(testFile);
UIMFRunTester tester = new UIMFRunTester();
int startScan = run.MinLCScan;
int stopScan = run.MaxLCScan;
int startFrame = 1;
int stopFrame = 7;
tester.DisplayBasicRunInfo(run);
tester.DisplayFrameParameters(run, startFrame, stopFrame);
}
public void isolatedProblem_Test1()
{
RunFactory runfactory = new RunFactory();
UIMFRun run = (UIMFRun)runfactory.CreateRun(testFile);
UIMFRunTester tester = new UIMFRunTester();
int startScan = 283;
int stopScan = 286;
int startFrame = 6;
int stopFrame = 6;
tester.DisplayBasicRunInfo(run);
tester.GenerateMassSpectraForRanges(run, startFrame, stopFrame, startScan, stopScan);
// tester.DisplayFrameParameters(run, startFrame, stopFrame);
}
public void getMassSpectra()
{
RunFactory runfactory = new RunFactory();
UIMFRun run = (UIMFRun)runfactory.CreateRun(testFile);
UIMFRunTester tester = new UIMFRunTester();
int startScan = run.MinLCScan;
int stopScan = run.MaxLCScan;
int startFrame = 6;
int stopFrame = 6;
tester.DisplayBasicRunInfo(run);
tester.GenerateMassSpectraForRanges(run, startFrame, stopFrame, startScan, stopScan);
// tester.DisplayFrameParameters(run, startFrame, stopFrame);
}
public void reopenedRedmineIssue_test1()
{
string problemFile = @"\\proto-10\IMS_TOF_3\2010_4\okd_urine_S15_19Nov10_Cheetah_10-08-06_0000\okd_urine_S15_19Nov10_Cheetah_10-08-06_0000.UIMF";
RunFactory runfactory = new RunFactory();
UIMFRun run = (UIMFRun)runfactory.CreateRun(problemFile);
UIMFRunTester tester = new UIMFRunTester();
int startScan = run.MinLCScan;
int stopScan = run.MaxLCScan;
int startFrame = 0;
int stopFrame = 9;
tester.DisplayBasicRunInfo(run);
tester.GenerateMassSpectraForRanges(run, startFrame, stopFrame, startScan, stopScan);
//Getting error:
//1 0 FAILED. Specified argument was out of the range of valid values.
// Parameter name: ERROR in SumScansNonCached: frame_index 1 is not in range; should be >= 0 and < 0
}