public List <IsosResult> getIsosResults(string isosInputFile, Globals.MSFileType fileType)
{
var isoUtil = new IsosResultUtilities();
isoUtil.LoadResults(isosInputFile, fileType);
return(isoUtil.Results);
}
public List <IsosResult> getIsosResults(string isosInputFile, Globals.MSFileType fileType, int minScan, int maxScan)
{
var isoUtil = new IsosResultUtilities();
isoUtil.LoadResults(isosInputFile, fileType);
return(isoUtil.Results.Where(p => p.ScanSet.PrimaryScanNumber >= minScan && p.ScanSet.PrimaryScanNumber <= maxScan).ToList());
}
public List <IsosResult> getIMFResults(string imfInputDirectory, int minFrame, int maxFrame)
{
var returnedResults = new List <IsosResult>();
var imfDirectory = new DirectoryInfo(imfInputDirectory);
var files = imfDirectory.GetFiles("*_isos.csv");
foreach (var file in files)
{
var currentFrame = getFrameFromFilename(file.Name);
if (currentFrame >= minFrame && currentFrame <= maxFrame)
{
var isoUtil = new IsosResultUtilities();
var isosFileName = file.FullName;
//string isosFileName = Path.Combine(Path.GetDirectoryName(file.FullName), Path.GetFileNameWithoutExtension(file.FullName) + "_isos.csv");
isoUtil.LoadResults(isosFileName, Globals.MSFileType.PNNL_IMS);
var isosResultsForFrame = convertIMFResultsToUIMFResults(currentFrame, isoUtil.Results);
returnedResults.AddRange(isosResultsForFrame);
}
}
return(returnedResults);
}
public List <IsosResult> getIsosResults(string isosInputFile, DeconTools.Backend.Globals.MSFileType filetype)
{
var isoutil = new IsosResultUtilities();
isoutil.LoadResults(isosInputFile, filetype);
return(isoutil.Results);
}
public List <IsosResult> getUIMFResults(string uimfInputFile, int minFrame, int maxFrame)
{
var uimfIsoUtil = new IsosResultUtilities();
uimfIsoUtil.LoadResults(uimfInputFile, Globals.MSFileType.PNNL_UIMF, minFrame, maxFrame);
// List<IsosResult> filteredIsos = new List<IsosResult>();
//foreach (IsosResult result in uimfIsoUtil.Results)
//{
// UIMFIsosResult uimfResult = (UIMFIsosResult)result;
// if (uimfResult.FrameSet.PrimaryFrame >= minFrame && uimfResult.FrameSet.PrimaryFrame <= maxFrame)
// {
// filteredIsos.Add(result);
// }
//}
return(uimfIsoUtil.Results);
}
