public int Compute(DataSample sample)
{
var probabilities = GetLikelyhood(sample);
var maxProbabilityIndex = 0;
for (int index = 0; index < probabilities.Length; index++)
{
if (probabilities[maxProbabilityIndex] < probabilities[index])
{
maxProbabilityIndex = index;
}
}
return(maxProbabilityIndex);
}
public int Compute(DataSample sample)
{
var probabilities = GetLikelyhood(sample);
var maxProbabilityIndex = 0;
for (int index = 0; index < probabilities.Length; index++)
{
if (probabilities[maxProbabilityIndex] < probabilities[index])
{
maxProbabilityIndex = index;
}
}
return maxProbabilityIndex;
}
public void GetLikelyhood(DataSample sample, double[] result)
{
var probabilities = result;
for (int index = 0; index < probabilities.Length; index++)
{
probabilities[index] = _classesProbablityDistribution.GetLogProbability(index);
foreach (var dataPoint in sample.DataPoints)
{
var value = Convert.ToDouble(dataPoint.Value);
probabilities[index] = probabilities[index] +
_distribution[index, dataPoint.ColumnId].GetLogProbability(value);
}
}
}
public NaiveBayesClassifier(DataSample[] samples, int classes, ColumnDataType[] columnDataTypes)
{
_classes = classes;
_distribution = new IDistribution[classes, columnDataTypes.Length];
_classesProbablityDistribution = new CategoricalDistribution(
samples.Select(item => item.ClassId).ToArray(), classes);
var splitDataPerClass = SplitDataPerClass(samples, _classes, columnDataTypes.Length);
var groups = GetClassGroups(samples, _classes);
for (int index = 0; index < columnDataTypes.Length; index++)
{
//var values = GetDataPerClass(samples, _classes, index);
Double[][] values = new double[classes][];
for (int classIndex = 0; classIndex < classes; classIndex++)
{
values[classIndex] = splitDataPerClass[index, classIndex];
}
//var values = splitDataPerClass[index,_]
if (values.All(item => item == null))
{
continue;
}
for (int classIndex = 0; classIndex < classes; classIndex++)
{
var itemsOnClass = values[classIndex] ?? new double[0];
if (!columnDataTypes[index].IsDiscrete)
{
_distribution[classIndex, index] = new GaussianDistribution(itemsOnClass);
}
else
{
_distribution[classIndex, index] =
new CategoricalDistribution(itemsOnClass.Select(Convert.ToInt32).ToArray(),
columnDataTypes[index].NumberOfCategories, groups[classIndex]);
}
}
}
}
public Double[] GetLikelyhood(DataSample sample)
{
var probabilities = new double[_classes];
//for (int index = 0; index < probabilities.Length; index++)
//{
// probabilities[index] = _classesProbablityDistribution.GetLogProbability(index);
// foreach (var dataPoint in sample.DataPoints)
// {
// var value = Convert.ToDouble(dataPoint.Value);
// probabilities[index] = probabilities[index] +
// _distribution[index, dataPoint.ColumnId].GetLogProbability(value);
// }
//}
GetLikelyhood(sample, probabilities);
return(probabilities);
}
public static DataSample[] ToSample(TableFixedData tableFixedData)
{
var samples = new DataSample[tableFixedData.Count];
for (int rowIndex = 0; rowIndex < tableFixedData.Count; rowIndex++)
{
var currentSample = new DataSample
{
DataPoints = new DataPoint[tableFixedData.Attributes.Length - 1],
ClassId = tableFixedData.Class(rowIndex)
};
int dataPointIndex = 0;
for (int columnIndex = 0; columnIndex < tableFixedData.Attributes.Length; columnIndex++)
{
if (tableFixedData.Attributes[columnIndex] != TableData.ClassAttributeName)
{
var value = tableFixedData[rowIndex, columnIndex];
var dataPoint = new DataPoint
{
ColumnId = columnIndex,
Value =
tableFixedData.IsDiscreteColumn(columnIndex)
? Convert.ToDouble(tableFixedData.GetSymbol(value.ToString(), columnIndex))
: Convert.ToDouble(value)
};
currentSample.DataPoints[dataPointIndex] = dataPoint;
dataPointIndex++;
}
}
samples[rowIndex] = currentSample;
}
return(samples);
}
public int[] GetClassGroups(DataSample[] samples, int classes)
{
var ret = new int[classes];
for (int index = 0; index < samples.Length; index++)
{
ret[samples[index].ClassId] ++;
}
return ret;
}
public Double[,][] SplitDataPerClass(DataSample[] samples, int classes, int columns)
{
var retLists = new List<Double>[columns, classes];
var dataRet = new double[columns, classes][];
for (int index = 0; index < samples.Length; index++)
{
var sample = samples[index];
foreach (var datapoint in sample.DataPoints)
{
if (retLists[datapoint.ColumnId, sample.ClassId] == null)
{
retLists[datapoint.ColumnId, sample.ClassId] = new List<double>();
}
retLists[datapoint.ColumnId, sample.ClassId].Add(datapoint.Value);
}
}
for (int columnIndex = 0; columnIndex < columns; columnIndex++)
{
for (int index = 0; index < classes; index++)
{
if (retLists[columnIndex, index] != null)
{
dataRet[columnIndex, index] = retLists[columnIndex, index].ToArray();
}
}
}
return dataRet;
}
public void GetLikelyhood(DataSample sample, double[] result)
{
var probabilities = result;
for (int index = 0; index < probabilities.Length; index++)
{
probabilities[index] = _classesProbablityDistribution.GetLogProbability(index);
foreach (var dataPoint in sample.DataPoints)
{
var value = Convert.ToDouble(dataPoint.Value);
probabilities[index] = probabilities[index] +
_distribution[index, dataPoint.ColumnId].GetLogProbability(value);
}
}
}
public Double[] GetLikelyhood(DataSample sample)
{
var probabilities = new double[_classes];
//for (int index = 0; index < probabilities.Length; index++)
//{
// probabilities[index] = _classesProbablityDistribution.GetLogProbability(index);
// foreach (var dataPoint in sample.DataPoints)
// {
// var value = Convert.ToDouble(dataPoint.Value);
// probabilities[index] = probabilities[index] +
// _distribution[index, dataPoint.ColumnId].GetLogProbability(value);
// }
//}
GetLikelyhood(sample, probabilities);
return probabilities;
}